BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0172.p         (145 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SXZ6.1 A6SXZ6_JANMA Two-component sensor histidine kinase            84   7e-15
A4G677.1 A4G677_HERAR Putative signal transduction histidine kinase    82   2e-14
F1VWU8.1 F1VWU8_9BURK Putative uncharacterized protein                 82   2e-14
D7DPX5.1 D7DPX5_METS0 PAS/PAC sensor signal transduction histidi...    78   5e-13
D4IAW1.1 D4IAW1_ERWAE Two-component sensor kinase                      72   3e-11

>A6SXZ6.1 A6SXZ6_JANMA Two-component sensor histidine kinase
          Length = 490

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 14  DRIKEAERRRIAKDLHDELGSHLTALKMALAQLGGQLPRDNDALLDQARHADGLIDGALE 73
           + +KE ER RIA+++HD+LG +LTA+KMALA L  +LP  +  LL++A + + L+D  +E
Sbjct: 272 NTVKEKERTRIAREIHDDLGGNLTAIKMALALLTRRLPGKSSELLEKAAYVESLVDRTIE 331

Query: 74  AMHDIIDDLHPAVLDLGLQAA---XLHPAVLDLGYPAELQPQEARLYRDFQIAQQFLR 128
            +H I  DL P +LD GL AA           LG P E    +A +  D   A    R
Sbjct: 332 TVHRIAGDLRPGILDFGLVAAIDWQSKEFEKQLGIPCEFVSNQAEIDLDLDQATALFR 389


>A4G677.1 A4G677_HERAR Putative signal transduction histidine kinase
          Length = 478

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 58/81 (71%)

Query: 14  DRIKEAERRRIAKDLHDELGSHLTALKMALAQLGGQLPRDNDALLDQARHADGLIDGALE 73
           D +KE ER  IA+++HD+LG +LTA+KMALA L  +LPR N  L+++A + + L+D  +E
Sbjct: 272 DIVKEQERTHIAREIHDDLGGNLTAIKMALALLTRRLPRKNVELIEKADYVESLVDRTIE 331

Query: 74  AMHDIIDDLHPAVLDLGLQAA 94
           ++H I  +L P +LD GL AA
Sbjct: 332 SVHRIAGNLRPGILDFGLVAA 352


>F1VWU8.1 F1VWU8_9BURK Putative uncharacterized protein
          Length = 446

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 14/121 (11%)

Query: 14  DRIKEAERRRIAKDLHDELGSHLTALKMALAQLGGQLPRDNDALLDQARHADGLIDGALE 73
           +R+KE ER RIA+++HD+ G +LTA+KMALA L  +LP D+ AL D+A + D L+D  +E
Sbjct: 225 ERVKEEERTRIAREIHDDRGGNLTAIKMALALLRRRLP-DDPALTDKADYVDSLVDRTIE 283

Query: 74  AMHDIIDDLHPAVLDLGLQAAXLHPAV---LDLGYPA---------ELQPQEAR-LYRDF 120
           ++H I  DL P++LD G+ AA    A      LG P          +L P++A  L+R F
Sbjct: 284 SIHRISVDLRPSILDFGIVAAIEWQAAEFEKQLGIPCHVASSDSDIDLPPEQASALFRIF 343

Query: 121 Q 121
           Q
Sbjct: 344 Q 344


>D7DPX5.1 D7DPX5_METS0 PAS/PAC sensor signal transduction histidine kinase
           EC=2.7.13.3
          Length = 485

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 55/80 (68%)

Query: 15  RIKEAERRRIAKDLHDELGSHLTALKMALAQLGGQLPRDNDALLDQARHADGLIDGALEA 74
           +IKE ER  IA+++HD+LG +LTA+KM L+ +  +L +  D  ++QA+  + ++D   EA
Sbjct: 283 KIKEQERSAIAREIHDDLGGNLTAIKMGLSSIINKLSKGQDVTIEQAQGLESILDSTFEA 342

Query: 75  MHDIIDDLHPAVLDLGLQAA 94
           +H I  DL P VLDLG+ AA
Sbjct: 343 VHRISSDLRPNVLDLGIVAA 362


>D4IAW1.1 D4IAW1_ERWAE Two-component sensor kinase
          Length = 494

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/78 (42%), Positives = 51/78 (65%)

Query: 17  KEAERRRIAKDLHDELGSHLTALKMALAQLGGQLPRDNDALLDQARHADGLIDGALEAMH 76
           +E ER+RIA+++HDELG HLT+L+M ++ L  Q  +DN  L ++  H  GL D  ++ + 
Sbjct: 284 REEERKRIAREIHDELGQHLTSLRMGISMLRIQFSKDNPLLHERVVHLMGLTDKTIQVVR 343

Query: 77  DIIDDLHPAVLDLGLQAA 94
           ++   L P VLD+GL  A
Sbjct: 344 NVATRLRPNVLDMGLTPA 361