BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0143.p (287 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYU6.1 D8IYU6_HERSS Lysyl-tRNA synthetase EC=6.1.1.6 382 e-104 F1W3P0.1 F1W3P0_9BURK Lysyl-tRNA synthetase (Class II) 370 e-100 C3X7P4.1 C3X7P4_OXAFO Lysyl-tRNA synthetase EC=6.1.1.6 354 1e-95 A6SXF3.1 SYK_JANMA Lysyl-tRNA synthetase EC=6.1.1.6 349 2e-94 A4G778.1 SYK_HERAR Lysyl-tRNA synthetase EC=6.1.1.6 349 3e-94 >D8IYU6.1 D8IYU6_HERSS Lysyl-tRNA synthetase EC=6.1.1.6 Length = 513 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/229 (82%), Positives = 203/229 (88%), Gaps = 3/229 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTTQN AAQP DEN+IIAERRAKL AIREQG+AFPNDFRP + AA LHA+YD + Sbjct: 1 MTTQNTPAAQP---AADENSIIAERRAKLAAIREQGVAFPNDFRPANQAADLHAKYDGFE 57 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEALEA PV V++AGRMMLKRVMGKA+FATLQDASG+RADGR+QLY+T DVTGE A AAF Sbjct: 58 NEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDVTGEEAMAAF 117 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 KHYDLGDILGAEGTLFKTKTGELSVKVT L+LITKSLRPLPDKFHGL+DQE KYRQRYVD Sbjct: 118 KHYDLGDILGAEGTLFKTKTGELSVKVTKLKLITKSLRPLPDKFHGLADQEMKYRQRYVD 177 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETRRTFKARTAAMSSIRRFME + FMEVETPMLH IPGGA P Sbjct: 178 LIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPMLHPIPGGAAAKP 226 >F1W3P0.1 F1W3P0_9BURK Lysyl-tRNA synthetase (Class II) Length = 510 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/229 (79%), Positives = 199/229 (86%), Gaps = 2/229 (0%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT + AA P DE++I+AERR+KL AIR GIAFPNDFRP+H AAALH Q+D LD Sbjct: 1 MTTTTEVAAGLPAP--DEHSILAERRSKLAAIRAAGIAFPNDFRPQHKAAALHLQFDVLD 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEAL+A PVKV +AGRMMLKRVMGKASFATLQDASG+RADGR+QLY+TND G AH AF Sbjct: 59 NEALDATPVKVVVAGRMMLKRVMGKASFATLQDASGVRADGRIQLYITNDNVGADAHDAF 118 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 KHYDLGDILGAEG LFKTKTGELS+KVT LRLITKSLRPLPDKFHGL+DQE KYRQRYVD Sbjct: 119 KHYDLGDILGAEGLLFKTKTGELSIKVTALRLITKSLRPLPDKFHGLADQEMKYRQRYVD 178 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETRRTFKARTA MSSIRRFM +++FMEVETPMLHTIPGGA P Sbjct: 179 LIMSEETRRTFKARTATMSSIRRFMNEHEFMEVETPMLHTIPGGAAAKP 227 >C3X7P4.1 C3X7P4_OXAFO Lysyl-tRNA synthetase EC=6.1.1.6 Length = 511 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 170/229 (74%), Positives = 199/229 (86%), Gaps = 1/229 (0%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTTQ N +P P DEN+I+AERRAKL A+REQG+A+PNDFRP++ A +HAQYD +D Sbjct: 1 MTTQTQNN-EPAAPAQDENSIMAERRAKLAALREQGVAYPNDFRPKNKADDIHAQYDGMD 59 Query: 61 NEALEANPVKVSIAGRMMLKRVMGKASFATLQDASGLRADGRMQLYVTNDVTGEAAHAAF 120 NEALEA ++V +AGRMMLKRVMGKASFATLQDASGL+A+GR+QL+++ND TG+ AH AF Sbjct: 60 NEALEAAKIEVCVAGRMMLKRVMGKASFATLQDASGLQANGRIQLFLSNDATGKEAHDAF 119 Query: 121 KHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYVD 180 K YD+GDILGA GTLFKT+TGELSV+V+ +RLITKS+RPLPDKFHGLSDQE KYRQRYVD Sbjct: 120 KRYDIGDILGATGTLFKTRTGELSVRVSEVRLITKSVRPLPDKFHGLSDQELKYRQRYVD 179 Query: 181 LIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 LIMSEETR+TFKARTAA++SIRRFM N FMEVETPMLH IPGGA P Sbjct: 180 LIMSEETRKTFKARTAAIASIRRFMGDNGFMEVETPMLHAIPGGAAAKP 228 >A6SXF3.1 SYK_JANMA Lysyl-tRNA synthetase EC=6.1.1.6 Length = 511 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 175/230 (76%), Positives = 195/230 (84%), Gaps = 3/230 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT ND+AA P DEN IIAERRAKL+A+REQGIAFPNDFRP+H AA LH +YD Sbjct: 1 MTTHNDDAAAAL--PQDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLHEKYDGKT 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGK-ASFATLQDASGLRADGRMQLYVTNDVTGEAAHAA 119 E LEA PV V++AGRMMLKR GK A+FATLQDASG +ADGR+Q+Y T D+TGEAA AA Sbjct: 59 REELEAEPVTVTLAGRMMLKREAGKKAAFATLQDASGAKADGRIQIYATLDLTGEAAMAA 118 Query: 120 FKHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYV 179 HYDLGDILG GTLFKTKT EL++KVT LRL+TKSLRPLPDKFHGL+DQETKYRQRYV Sbjct: 119 LHHYDLGDILGVVGTLFKTKTDELTIKVTELRLLTKSLRPLPDKFHGLADQETKYRQRYV 178 Query: 180 DLIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 DLIM+E+TRRTFKARTAA+SSIRRFM +NDFMEVETPMLHTIPGGA P Sbjct: 179 DLIMNEDTRRTFKARTAAISSIRRFMAENDFMEVETPMLHTIPGGAAAKP 228 >A4G778.1 SYK_HERAR Lysyl-tRNA synthetase EC=6.1.1.6 Length = 511 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 174/230 (75%), Positives = 195/230 (84%), Gaps = 3/230 (1%) Query: 1 MTTQNDNAAQPQQPPVDENAIIAERRAKLNAIREQGIAFPNDFRPEHNAAALHAQYDELD 60 MTT ND+AA P+DEN IIAERRAKL+A+REQGIAFPNDFRP+H AA L +Y Sbjct: 1 MTTHNDDAAASL--PIDENKIIAERRAKLSALREQGIAFPNDFRPQHKAADLQEKYGSKT 58 Query: 61 NEALEANPVKVSIAGRMMLKRVMGK-ASFATLQDASGLRADGRMQLYVTNDVTGEAAHAA 119 E LEA PV V +AGRMMLKR GK A+FATLQDASG +ADGR+Q+YVT ++TGEAA AA Sbjct: 59 REELEAEPVTVVLAGRMMLKREAGKKAAFATLQDASGSKADGRIQIYVTLNLTGEAAMAA 118 Query: 120 FKHYDLGDILGAEGTLFKTKTGELSVKVTGLRLITKSLRPLPDKFHGLSDQETKYRQRYV 179 HYDLGDILG GTLFKTKT EL++KV+ LRLITKSLRPLPDKFHGL+DQETKYRQRYV Sbjct: 119 LHHYDLGDILGVSGTLFKTKTDELTIKVSELRLITKSLRPLPDKFHGLADQETKYRQRYV 178 Query: 180 DLIMSEETRRTFKARTAAMSSIRRFMEKNDFMEVETPMLHTIPGGAPQNP 229 DLIM+E+TRRTFKARTAA+SSIRRFME+NDFMEVETPMLHTIPGGA P Sbjct: 179 DLIMNEDTRRTFKARTAAISSIRRFMERNDFMEVETPMLHTIPGGAAAKP 228