BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0128.p (360 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRS4.1 D8IRS4_HERSS Periplasmic serine protease (ClpP class) p... 431 e-118 A4G6T8.1 A4G6T8_HERAR Putative peptidase S49 374 e-101 A6SXP3.1 A6SXP3_JANMA Peptidase U7 family EC=3.4.-.- 367 1e-99 F1VU33.1 F1VU33_9BURK Peptidase S49 361 1e-97 C3X2M0.1 C3X2M0_OXAFO Peptidase U7 family 340 2e-91 >D8IRS4.1 D8IRS4_HERSS Periplasmic serine protease (ClpP class) protein Length = 343 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/278 (74%), Positives = 238/278 (85%), Gaps = 11/278 (3%) Query: 1 MSNNEFENPAAQP----PKPAEPVPPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQR 56 MSNNE E+P +QP P P+ +P A ++KK GWERDVLEKLALFAVKEQR Sbjct: 1 MSNNESEHPESQPQSTPPAPSSSIP-------ASVRDDKKSGWERDVLEKLALFAVKEQR 53 Query: 57 ARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVI 116 ARRRW +FF+IA LAV V +W AF + + E+EP+G HTALVEI G I++EG+GSA VI Sbjct: 54 ARRRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVI 113 Query: 117 PALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGG 176 PALDKAFAA+DS+GVILKINSPGGSPVQAGMINDEI RLRK+YPKKP+YVVVEE+CASGG Sbjct: 114 PALDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGG 173 Query: 177 YYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQN 236 YYIAAAADKI+VNKAS+VGS+GVLMDGFGFTGLMDK+GVERRLLTAGENK FLDPFS Q+ Sbjct: 174 YYIAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQS 233 Query: 237 PKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFA 274 PKQ+EYAQ ML EIHQQFI+VVR+GRG RLKETP+TF+ Sbjct: 234 PKQREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFS 271 >A4G6T8.1 A4G6T8_HERAR Putative peptidase S49 Length = 334 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/254 (72%), Positives = 209/254 (82%), Gaps = 2/254 (0%) Query: 21 PPTTGTATAVAAEEKKGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSA 80 PP+ AT A KK GWER+VLEKLA +KEQRARRRW IFFK L + F +W++ Sbjct: 11 PPSWQAATP--AIPKKEGWEREVLEKLAFATIKEQRARRRWGIFFKFTTLLLIAFALWTS 68 Query: 81 FNYTKSESEPVGTHTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGG 140 F + S+ E VG HTAL++I GTIEA+G G A VI AL KA+A S+G+IL+INSPGG Sbjct: 69 FGPSVSDMENVGPHTALIKIEGTIEAKGAGDAETVISALTKAYADPGSVGLILQINSPGG 128 Query: 141 SPVQAGMINDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVL 200 SPVQAG+INDEI RLRK+YPKKPLYVVV E+CASGGYYIA+AAD+IYVNKASIVGSIGVL Sbjct: 129 SPVQAGIINDEITRLRKKYPKKPLYVVVNEICASGGYYIASAADRIYVNKASIVGSIGVL 188 Query: 201 MDGFGFTGLMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRK 260 MDGFGFTG M+K+GVERRLLTAGENKGFLDPFS Q KQKEYAQ MLNEIHQQFIDVVR Sbjct: 189 MDGFGFTGTMEKLGVERRLLTAGENKGFLDPFSPQTEKQKEYAQGMLNEIHQQFIDVVRT 248 Query: 261 GRGQRLKETPETFA 274 GRG+RLKETPE F+ Sbjct: 249 GRGKRLKETPEIFS 262 >A6SXP3.1 A6SXP3_JANMA Peptidase U7 family EC=3.4.-.- Length = 334 Score = 367 bits (942), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 175/246 (71%), Positives = 204/246 (82%) Query: 29 AVAAEEKKGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSES 88 + AA KK GWER+VLEKLA +KEQRARRRW IFFK +A+ F +W +F + + Sbjct: 17 STAAAPKKEGWEREVLEKLAFATLKEQRARRRWGIFFKFVTVALIAFALWMSFGPSVGDM 76 Query: 89 EPVGTHTALVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQAGMI 148 E VG HTAL++I GTIEA+G G A +VI AL KA+A S+G+IL+INSPGGSPVQAG+I Sbjct: 77 ENVGPHTALIKIDGTIEAKGAGDADSVISALTKAYADPGSVGLILQINSPGGSPVQAGII 136 Query: 149 NDEIVRLRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTG 208 NDE+ RLRK+YP+KPLYVVV EMCASGGYYIA AAD+IYVNKAS+VGSIGVLMDGFGFTG Sbjct: 137 NDEMTRLRKKYPQKPLYVVVNEMCASGGYYIAVAADRIYVNKASLVGSIGVLMDGFGFTG 196 Query: 209 LMDKVGVERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKE 268 M+K+GVERR+LTAG NKGF+DPFS Q QK YAQ MLNEIHQQFIDVVRKGRG+RLKE Sbjct: 197 TMEKLGVERRMLTAGNNKGFMDPFSPQTETQKHYAQDMLNEIHQQFIDVVRKGRGKRLKE 256 Query: 269 TPETFA 274 TPETF+ Sbjct: 257 TPETFS 262 >F1VU33.1 F1VU33_9BURK Peptidase S49 Length = 313 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 178/240 (74%), Positives = 208/240 (86%), Gaps = 1/240 (0%) Query: 36 KGGWERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESEPVGTHT 95 K GWERDV+EKLA A++EQRARRRW IFF++A LA VF IW+ ++ K+++E + THT Sbjct: 2 KDGWERDVIEKLAYEALREQRARRRWGIFFRLATLAAVVFGIWAFVSFGKTDTEVLTTHT 61 Query: 96 ALVEISGTIEAEGRGSAAA-VIPALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVR 154 AL++I GTIE+ G +A VIPAL+KA+A ++G+IL+INSPGGSPVQAGMINDEI R Sbjct: 62 ALIDIDGTIESGGGSGSAESVIPALNKAYADTAAVGIILRINSPGGSPVQAGMINDEIGR 121 Query: 155 LRKEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVG 214 L K YPKKPLYVVV+EMCASGGYYIA AADKI+VNKASIVGSIGVLMDGFGFTGLMDKVG Sbjct: 122 LHKLYPKKPLYVVVDEMCASGGYYIAVAADKIFVNKASIVGSIGVLMDGFGFTGLMDKVG 181 Query: 215 VERRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFA 274 VERRL TAG NKGF+DPFS Q+ KQK YAQ+ML+EIHQQFIDVVRKGRG+RLKETPETF+ Sbjct: 182 VERRLQTAGVNKGFMDPFSPQSEKQKAYAQEMLDEIHQQFIDVVRKGRGKRLKETPETFS 241 >C3X2M0.1 C3X2M0_OXAFO Peptidase U7 family Length = 315 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 166/238 (69%), Positives = 194/238 (81%), Gaps = 2/238 (0%) Query: 39 WERDVLEKLALFAVKEQRARRRWSIFFKIAGLAVFVFVIWSAFNYTKSESE--PVGTHTA 96 WERDVLEKL +KEQRARRRW IFFK+ L + +F+I S N++ SE E PV HTA Sbjct: 6 WERDVLEKLMFQTLKEQRARRRWGIFFKLVTLFLIIFLIVSVRNFSFSEGEGAPVQPHTA 65 Query: 97 LVEISGTIEAEGRGSAAAVIPALDKAFAADDSLGVILKINSPGGSPVQAGMINDEIVRLR 156 ++EI GTIEA G SA+ +I ALD+A+ + GVILKINSPGGSPVQAGMI DEI RLR Sbjct: 66 VIEIRGTIEATGNASASNIIKALDRAYKEPMATGVILKINSPGGSPVQAGMIYDEIRRLR 125 Query: 157 KEYPKKPLYVVVEEMCASGGYYIAAAADKIYVNKASIVGSIGVLMDGFGFTGLMDKVGVE 216 YP KPLYVVVEE+CASGGYYIAAAADKIYV+KASIVGSIGV+++GFG TGLMDK+G+E Sbjct: 126 NTYPDKPLYVVVEELCASGGYYIAAAADKIYVDKASIVGSIGVMINGFGVTGLMDKLGIE 185 Query: 217 RRLLTAGENKGFLDPFSAQNPKQKEYAQQMLNEIHQQFIDVVRKGRGQRLKETPETFA 274 RRLLTAGE KGFLDPFS Q P+Q +YAQ MLN+IHQQFI+VVR+GRG RLKE E ++ Sbjct: 186 RRLLTAGEYKGFLDPFSPQTPQQIQYAQSMLNQIHQQFIEVVREGRGNRLKENREIYS 243