BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0127.p         (123 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IRS3.1 D8IRS3_HERSS Nitrite reductase ferredoxin subunit prote...   199   8e-50
A4G6T9.1 A4G6T9_HERAR Putative iron-sulfur cluster-binding prote...   184   4e-45
F1VU34.1 F1VU34_9BURK Iron-sulfur cluster-binding protein, Riesk...   173   8e-42
A6SXP2.1 A6SXP2_JANMA Uncharacterized conserved protein               172   2e-41
E1T5M7.1 E1T5M7_BURSG Rieske (2Fe-2S) iron-sulfur domain protein      163   7e-39

>D8IRS3.1 D8IRS3_HERSS Nitrite reductase ferredoxin subunit protein
           EC=1.7.1.4
          Length = 124

 Score =  199 bits (507), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 103/119 (86%)

Query: 5   AIQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEF 64
           AI +CASAE+ EGG G+RF V V GD+A+GFVVRYGG VYGYLNRCAH+P+ELDWAEGEF
Sbjct: 6   AILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDWAEGEF 65

Query: 65  FESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDDYVRPALA 123
           FESSGLYLMCATHGAVYAPDTGKC GGPCTGA LRKIM  E++G +FW PDD V+P  A
Sbjct: 66  FESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMTVEREGQVFWRPDDVVKPVEA 124


>A4G6T9.1 A4G6T9_HERAR Putative iron-sulfur cluster-binding protein, Rieske
           family
          Length = 123

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 98/123 (79%)

Query: 1   MEEVAIQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWA 60
           M  V I +C ++ +EEGGKG RF V+  GDDATGFVVRYGG    YLNRCAHVPIELDW 
Sbjct: 1   MTTVLIPICDASALEEGGKGIRFPVTAGGDDATGFVVRYGGLARAYLNRCAHVPIELDWN 60

Query: 61  EGEFFESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDDYVRP 120
           EG+FFESSGLYL+C+THGAVY P+TG+CEGGPC G  LR+I V EKD  +FW PD+YV+P
Sbjct: 61  EGDFFESSGLYLICSTHGAVYTPETGRCEGGPCRGRSLRRIEVMEKDNQVFWQPDEYVKP 120

Query: 121 ALA 123
           A A
Sbjct: 121 ARA 123


>F1VU34.1 F1VU34_9BURK Iron-sulfur cluster-binding protein, Rieske family
          Length = 124

 Score =  173 bits (438), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/117 (70%), Positives = 93/117 (79%)

Query: 5   AIQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEF 64
           AI VC SA + EGG+G RFAV+  G DAT FV+R+ G VYGYLNRCAHVPIELDW EGEF
Sbjct: 6   AIPVCDSAAVIEGGRGVRFAVTSAGADATAFVIRFRGVVYGYLNRCAHVPIELDWVEGEF 65

Query: 65  FESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDDYVRPA 121
           FESSGLYLMCATHGA+YAP++G+CEGGPC G +LR I V E +G I W PD YV  A
Sbjct: 66  FESSGLYLMCATHGAIYAPESGRCEGGPCRGGKLRPIAVTEINGQIAWCPDSYVTAA 122


>A6SXP2.1 A6SXP2_JANMA Uncharacterized conserved protein
          Length = 122

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 93/118 (78%)

Query: 6   IQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEFF 65
           I +C SA +E+GG G RF ++  G+DATGFVVRY G VYGYLNRCAH+PIELDW  GEFF
Sbjct: 5   ILICDSAALEDGGTGVRFPLTAGGEDATGFVVRYNGVVYGYLNRCAHIPIELDWNNGEFF 64

Query: 66  ESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDGAIFWAPDDYVRPALA 123
           E+ G YL+C+THGA+Y P+TG+C GGPC G RLR I+V EKD  +FW  D++VRPA A
Sbjct: 65  ETEGRYLICSTHGAIYLPETGRCAGGPCRGGRLRTIVVTEKDNQVFWQADEFVRPARA 122


>E1T5M7.1 E1T5M7_BURSG Rieske (2Fe-2S) iron-sulfur domain protein
          Length = 140

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 93/122 (76%), Gaps = 4/122 (3%)

Query: 5   AIQVCASAEIEEGGKGRRFAVSVHGDDATGFVVRYGGAVYGYLNRCAHVPIELDWAEGEF 64
           A++VCAS E+ +GG+G R A  +   +   F VRY G  YGYLNRCAHVP+ELDWAEG+F
Sbjct: 18  AVRVCASEELLDGGRGVRRAARIGAQEVVVFFVRYDGRAYGYLNRCAHVPMELDWAEGQF 77

Query: 65  FESSGLYLMCATHGAVYAPDTGKCEGGPCTGARLRKIMVFEKDG----AIFWAPDDYVRP 120
           FESSGLYLMCATHGA+YAPDTGKC GGPC GARLR + V E+D     A+FW PD  ++P
Sbjct: 78  FESSGLYLMCATHGAIYAPDTGKCVGGPCRGARLRALQVDERDTPEGRAVFWLPDGELQP 137

Query: 121 AL 122
           A+
Sbjct: 138 AM 139