BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0121.p         (55 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G6U3.1 A4G6U3_HERAR Ribonuclease E (RNase E) EC=3.1.4.-              85   3e-15
D8IRS0.1 D8IRS0_HERSS Ribonuclease E protein EC=3.1.26.12              82   3e-14
A6SXN9.1 A6SXN9_JANMA Ribonuclease E (RNAse E) protein EC=3.1.4.-      77   1e-12
Q46YZ5.1 Q46YZ5_CUPPJ RNAse E EC=3.1.4.-                               72   3e-11
B3R5K7.1 B3R5K7_CUPTR Ribonuclease E EC=3.1.4.-                        68   3e-10

>A4G6U3.1 A4G6U3_HERAR Ribonuclease E (RNase E) EC=3.1.4.-
          Length = 973

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 47/55 (85%)

Query: 1   MLSSAGLTLASTDPEKLRAAQAAAALIVPAPHVPRERKPLPPQSTDPLVQVETRR 55
           +L SAGL LASTDPEKLRAAQ  AA  VP P VPRERKPLPPQST+PLVQ+ET+R
Sbjct: 919 VLQSAGLVLASTDPEKLRAAQEEAAKFVPPPRVPRERKPLPPQSTEPLVQMETKR 973


>D8IRS0.1 D8IRS0_HERSS Ribonuclease E protein EC=3.1.26.12
          Length = 1062

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 49/55 (89%)

Query: 1    MLSSAGLTLASTDPEKLRAAQAAAALIVPAPHVPRERKPLPPQSTDPLVQVETRR 55
            MLS AGLTLA+TDP KLRAAQ AAA  VPAP VPRERKPLPPQST+PLVQVETRR
Sbjct: 1008 MLSQAGLTLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLPPQSTEPLVQVETRR 1062


>A6SXN9.1 A6SXN9_JANMA Ribonuclease E (RNAse E) protein EC=3.1.4.-
          Length = 974

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 45/55 (81%)

Query: 1   MLSSAGLTLASTDPEKLRAAQAAAALIVPAPHVPRERKPLPPQSTDPLVQVETRR 55
           +L +AGL LAST+PEKLRAAQ  AA  V    VPRERKPLPPQST+PLVQ+ET+R
Sbjct: 920 VLQAAGLVLASTNPEKLRAAQEEAAKYVAPARVPRERKPLPPQSTEPLVQMETKR 974


>Q46YZ5.1 Q46YZ5_CUPPJ RNAse E EC=3.1.4.-
          Length = 1042

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 41/53 (77%)

Query: 1    MLSSAGLTLASTDPEKLRAAQAAAALIVPAPHVPRERKPLPPQSTDPLVQVET 53
            ML++AGL   STD EKLRAAQ AAA IVPAP VPRERKPLPP    P+V VET
Sbjct: 979  MLATAGLEWVSTDSEKLRAAQEAAARIVPAPRVPRERKPLPPLPEGPMVLVET 1031


>B3R5K7.1 B3R5K7_CUPTR Ribonuclease E EC=3.1.4.-
          Length = 1031

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query: 1    MLSSAGLTLASTDPEKLRAAQAAAALIVPAPHVPRERKPLPPQSTDPLVQVET 53
            ML+SAGL    TD +KLR+AQ AAA IVPAP VPRERKPLPP    P++ VET
Sbjct: 968  MLASAGLQWVHTDSDKLRSAQEAAARIVPAPRVPRERKPLPPLPQGPMILVET 1020