BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0096.p         (92 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IRP8.1 D8IRP8_HERSS tRNA/rRNA methyltransferase protein EC=2.1...   176   9e-43
F1W427.1 F1W427_9BURK 23S rRNA (Guanosine-2'-O-)-methyltransfera...   164   6e-39
A4G4L5.1 A4G4L5_HERAR 23S rRNA (Guanosine-2'-O-)-methyltransfera...   157   4e-37
A6SZV7.1 A6SZV7_JANMA RNA methyltransferase, TrmH family EC=2.1.1.-   155   2e-36
E2T2P4.1 E2T2P4_9RALS RNA methyltransferase, TrmH family, group 3     154   4e-36

>D8IRP8.1 D8IRP8_HERSS tRNA/rRNA methyltransferase protein EC=2.1.1.-
          Length = 245

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 89/92 (96%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLARTMRDLK+RGVW+IG +DDA+K LY GDF+GPTALVMGSEGEGMRRLTRETCD+L
Sbjct: 154 VTNLARTMRDLKERGVWIIGTSDDAEKGLYEGDFTGPTALVMGSEGEGMRRLTRETCDVL 213

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRLPK 92
           V+IPMFGSVESLNVSVASGVCLYEARRQRLPK
Sbjct: 214 VNIPMFGSVESLNVSVASGVCLYEARRQRLPK 245


>F1W427.1 F1W427_9BURK 23S rRNA (Guanosine-2'-O-)-methyltransferase rlmB
          Length = 242

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/92 (81%), Positives = 84/92 (91%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+RDLKDRG+WLIG  +DA++ LY GDF+GPTAL+MGSEGEGMRRLT ETCD L
Sbjct: 150 VTNLARTLRDLKDRGIWLIGTTEDAEQTLYQGDFTGPTALIMGSEGEGMRRLTTETCDFL 209

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRLPK 92
           V IPMFG+VESLNVSVASGVCL+EARRQRL K
Sbjct: 210 VHIPMFGAVESLNVSVASGVCLFEARRQRLVK 241


>A4G4L5.1 A4G4L5_HERAR 23S rRNA (Guanosine-2'-O-)-methyltransferase RlmB (23S
           rRNA Gm2251 2'-O-methyltransferase) EC=2.1.1.34
          Length = 247

 Score =  157 bits (398), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 82/90 (91%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+R+LK+R + LIG  DD++K LY  DFSGP AL+MGSEGEGMRRLTRETCD+L
Sbjct: 154 VTNLARTLRELKERDILLIGTTDDSEKGLYEADFSGPAALIMGSEGEGMRRLTRETCDVL 213

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRL 90
           VSIPMFGSVESLNVSVASGVCLYEARRQR+
Sbjct: 214 VSIPMFGSVESLNVSVASGVCLYEARRQRI 243


>A6SZV7.1 A6SZV7_JANMA RNA methyltransferase, TrmH family EC=2.1.1.-
          Length = 247

 Score =  155 bits (392), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 81/90 (90%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+R+LK+R + LIG  DD++K LY  DFSGP ALVMGSEGEGMRRLTRETCD+L
Sbjct: 154 VTNLARTLRELKERDIMLIGTTDDSEKGLYEADFSGPAALVMGSEGEGMRRLTRETCDVL 213

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQRL 90
           V IPMFGSVESLNVSVASGVCLYEARRQR+
Sbjct: 214 VGIPMFGSVESLNVSVASGVCLYEARRQRI 243


>E2T2P4.1 E2T2P4_9RALS RNA methyltransferase, TrmH family, group 3
          Length = 250

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 82/89 (92%)

Query: 1   VTNLARTMRDLKDRGVWLIGMADDADKDLYAGDFSGPTALVMGSEGEGMRRLTRETCDIL 60
           VTNLART+R+L++RGVW+IG AD+A++DLY  DF GPTA+VMG+EGEGMRRLTRETCD L
Sbjct: 155 VTNLARTLRELQERGVWVIGTADEAEQDLYQADFKGPTAIVMGAEGEGMRRLTRETCDAL 214

Query: 61  VSIPMFGSVESLNVSVASGVCLYEARRQR 89
           VSIPM GSVESLNVSVASGVCL+EA RQR
Sbjct: 215 VSIPMAGSVESLNVSVASGVCLFEAVRQR 243