BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0093.p (453 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRP7.1 D8IRP7_HERSS Exoribonuclease RNAse R protein 768 0.0 A6SZV8.1 A6SZV8_JANMA Exoribonuclease RNAse R 736 0.0 A4G4L4.2 A4G4L4_HERAR RNase R, 3'-5' exoribonuclease EC=3.1.13.1 728 0.0 Q46ZJ7.1 Q46ZJ7_CUPPJ RNAse R EC=3.1.-.- 615 e-174 E5AQW7.1 E5AQW7_BURRH Ribonuclease R (EC 3.1.-.-) EC=3.1.-.- 613 e-173 >D8IRP7.1 D8IRP7_HERSS Exoribonuclease RNAse R protein Length = 839 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/416 (90%), Positives = 395/416 (94%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQFPYSIPSREEILGILRTSSGAQN LAAAL VKPEEMDGLTRRLNAMERDGQIK D Sbjct: 1 MSQFPYSIPSREEILGILRTSSGAQNAAALAAALGVKPEEMDGLTRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+G+Y+LTHS FI GRVSSHRDGFGFLLP+DGS D+FLPEKEMQKV+HGDRVQARI+GT Sbjct: 61 RAGHYKLTHSPDFILGRVSSHRDGFGFLLPDDGSDDLFLPEKEMQKVMHGDRVQARIVGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV RANTHVIGRLLNENGVW+VAPEDKRIG DV+LAG PGKAKAGQVV Sbjct: 121 DRRGRPEGTIVEVVERANTHVIGRLLNENGVWIVAPEDKRIGHDVLLAGPPGKAKAGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTE PSRYTQPVGKI EILGDIDDPGMEIEIAVRKYGVPHEFS+AAKKL++KLPSEV Sbjct: 181 SVELTEHPSRYTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKKLSAKLPSEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 +AADL DRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGR+ GYRLIVAIADVSHYVKPN Sbjct: 241 KAADLKDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRTKGYRLIVAIADVSHYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAVIHSAARLTYTEVA++LANTKGPEAA+R G+VPHL HLYEVFQALL AR R Sbjct: 361 FYPAVIHSAARLTYTEVASILANTKGPEAARRIGLVPHLTHLYEVFQALLTARQAR 416 >A6SZV8.1 A6SZV8_JANMA Exoribonuclease RNAse R Length = 816 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/416 (86%), Positives = 390/416 (93%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQ+ Y+IPSREEILGILRT++G+ + TLA AL VKP+EMDGL RRLNAMERDGQIK D Sbjct: 1 MSQYSYTIPSREEILGILRTATGSHDASTLATALGVKPDEMDGLMRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+GNYQL HS +FIEGRVSSHRDGFGFL+P+D SADIFLPEKEMQKVLHGDRVQARIIGT Sbjct: 61 RAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV+RAN+HVIGRLLNENGVWVVAPEDKRIGQD++LAGSPGKAK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKRIGQDIMLAGSPGKAKTGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTEQPSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPHEFS+AAKK A+KLP+EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAKKAAAKLPNEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 RA DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR++G+RLIVAIADVS+YVKPN Sbjct: 241 RAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 +ALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVITAKGEIKAYQ Sbjct: 301 EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITAKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAVIHSAARLTYTEVAA+L NTKG EA KR +VPHLL+LY V+QALLQAR R Sbjct: 361 FYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLLNLYGVYQALLQARHAR 416 >A4G4L4.2 A4G4L4_HERAR RNase R, 3'-5' exoribonuclease EC=3.1.13.1 Length = 820 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/416 (83%), Positives = 383/416 (92%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 +SQ+ Y+IPSREEILGILRT++ + + +LA L VK +EMDGL RRLNAMERDGQIK D Sbjct: 1 MSQYSYTIPSREEILGILRTATSSHDATSLATVLGVKTDEMDGLMRRLNAMERDGQIKPD 60 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R+GNYQL HS +FIEGRVSSHRDGFGFL+P+D SADIFLPEKEMQKVLHGDRVQARIIGT Sbjct: 61 RTGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT 120 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPGKAKAGQVV 180 DRRGRPEGTIVEVV+RANTHVIGRLLNENGVW+VAPED+RIGQD++L+GSPG AK GQVV Sbjct: 121 DRRGRPEGTIVEVVARANTHVIGRLLNENGVWIVAPEDQRIGQDIMLSGSPGNAKTGQVV 180 Query: 181 SVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSEV 240 SVELTEQPSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPHEFS+ AKK ASKLP EV Sbjct: 181 SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEEAKKAASKLPDEV 240 Query: 241 RAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKPN 300 RA DL DRVDLRDVPLVTIDGEDARDFDDAVYCEP KIGR++G+RLIVAIADVS+YVKPN Sbjct: 241 RAIDLTDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN 300 Query: 301 DALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAYQ 360 + LDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDRLTLVCDAVIT KGEIKAYQ Sbjct: 301 EPLDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITTKGEIKAYQ 360 Query: 361 FYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 FYPAV+HSAARLTYTEVAA+L NTKG EAAKR +VPHLL+L+ V++ALLQAR R Sbjct: 361 FYPAVMHSAARLTYTEVAAILGNTKGIEAAKRPALVPHLLNLHGVYKALLQARHAR 416 >Q46ZJ7.1 Q46ZJ7_CUPPJ RNAse R EC=3.1.-.- Length = 870 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 297/417 (71%), Positives = 344/417 (82%), Gaps = 1/417 (0%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 L+Q Y IPSREEILG+LRTS + +A ALSV +E DG +RL AMERDGQ++ + Sbjct: 9 LNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALSVTRKEHDGFQKRLAAMERDGQVELN 68 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 R G Y+L H +F+ GRV HRDGFGFL+ +DG DIFLPE+E+QK +H DR Q R++G Sbjct: 69 RKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGY 128 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILA-GSPGKAKAGQV 179 DRRGRPEG IVE++ RAN +VIGRLL+E GV VVAPEDKRIGQD+++ + GKA+ GQV Sbjct: 129 DRRGRPEGQIVEILERANRYVIGRLLSEGGVLVVAPEDKRIGQDILIPPKAQGKARVGQV 188 Query: 180 VSVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSE 239 VSVEL E P RY QPVG++ E+LGDIDDPGMEIEIAVRKYGVPH FS AA K AS LP E Sbjct: 189 VSVELIEFPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFSQAAAKEASALPDE 248 Query: 240 VRAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKP 299 VR DLD R+DLRDVPLVTIDGEDARDFDDAVYCEPVK+GRS G+RLIVAIADVSHYV+P Sbjct: 249 VRQTDLDHRIDLRDVPLVTIDGEDARDFDDAVYCEPVKMGRSKGWRLIVAIADVSHYVRP 308 Query: 300 NDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAY 359 LD DAL+R+TSVYFPRRVIPMLPEKLSNGLCSLNP VDRL +VCDAVITAKGE+K Y Sbjct: 309 GTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPQVDRLCMVCDAVITAKGELKGY 368 Query: 360 QFYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 QFYPAV+HSAARLTY EV +VL+NTKGPEA KRA +VPHL +LYE+FQ LL+AR +R Sbjct: 369 QFYPAVMHSAARLTYNEVWSVLSNTKGPEAHKRAELVPHLQNLYELFQVLLKARRER 425 >E5AQW7.1 E5AQW7_BURRH Ribonuclease R (EC 3.1.-.-) EC=3.1.-.- Length = 835 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 296/417 (70%), Positives = 345/417 (82%), Gaps = 1/417 (0%) Query: 1 LSQFPYSIPSREEILGILRTSSGAQNTMTLAAALSVKPEEMDGLTRRLNAMERDGQIKAD 60 LS++PY IPSREEILG+LRT+ +A AL++K +E +G +RL AMERDGQI+ D Sbjct: 20 LSKYPYPIPSREEILGVLRTTEQPLAGNDIAEALAIKRQEREGFFKRLGAMERDGQIRLD 79 Query: 61 RSGNYQLTHSDSFIEGRVSSHRDGFGFLLPEDGSADIFLPEKEMQKVLHGDRVQARIIGT 120 + G YQLTH +F+ GRV HRDG+GFL+ +D D+FL EMQKV+H DRV AR+ G Sbjct: 80 KRGYYQLTHPSNFVAGRVQGHRDGYGFLIRDDAGVDLFLSNAEMQKVMHNDRVLARVTGY 139 Query: 121 DRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVVAPEDKRIGQDVILAGSPG-KAKAGQV 179 DRRGRPE IVEV RAN +IGRLLNENG W+VAPEDKRIG D+++ + K K+GQV Sbjct: 140 DRRGRPEAHIVEVTERANKRIIGRLLNENGAWIVAPEDKRIGHDILVTQTGKVKPKSGQV 199 Query: 180 VSVELTEQPSRYTQPVGKIAEILGDIDDPGMEIEIAVRKYGVPHEFSDAAKKLASKLPSE 239 VS+ELT+ PSR++QPVGKI E+LGDIDDPGMEIEIAVRKYGVPH+FSDAA A+KLP + Sbjct: 200 VSIELTDFPSRHSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHQFSDAALAQAAKLPDD 259 Query: 240 VRAADLDDRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRSNGYRLIVAIADVSHYVKP 299 VRAADL RVDLRDVPLVTIDGEDARDFDDAVYCEPV++GR NG+RL+VAIADVSHYV Sbjct: 260 VRAADLRQRVDLRDVPLVTIDGEDARDFDDAVYCEPVRVGRQNGFRLLVAIADVSHYVAD 319 Query: 300 NDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVITAKGEIKAY 359 DALD DALERSTSVYFPRRVIPMLPEKLSNGLCSLNP VDR TLVCD VI A G+IKAY Sbjct: 320 GDALDHDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCTLVCDMVINASGDIKAY 379 Query: 360 QFYPAVIHSAARLTYTEVAAVLANTKGPEAAKRAGVVPHLLHLYEVFQALLQARAQR 416 QFYPAV+HSAARLTYTEVAAVL+NTKGPEAA+R ++PHL +L+ VF+ALL AR +R Sbjct: 380 QFYPAVMHSAARLTYTEVAAVLSNTKGPEAARRGALLPHLQNLHAVFKALLLAREKR 436