BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0066.p (236 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SZX2.1 A6SZX2_JANMA PilF type IV pilus assembly protein 275 3e-72 A4G4K0.1 A4G4K0_HERAR Putative uncharacterized protein 269 3e-70 F1W2W1.1 F1W2W1_9BURK Type IV pilus biogenesis protein PilF 250 1e-64 Q21W26.1 Q21W26_RHOFD TPR repeat protein 173 2e-41 Q1LLI9.1 Q1LLI9_RALME Type IV pilus biogenesis protein PilF 168 6e-40 >A6SZX2.1 A6SZX2_JANMA PilF type IV pilus assembly protein Length = 266 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/226 (58%), Positives = 169/226 (74%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 + D +KRA IRLQLAIGYY+Q Q V L+E LALQ P+FA+AY M AL M+ G +R Sbjct: 41 KTDNQKRARIRLQLAIGYYQQGQLNVALDEVKLALQTDPNFADAYSMAALIYMDQGETRM 100 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 AE +F +ALRL+P +PD +NNYGWFLC N RA ++IPYFEAA+ TY SP KAL NAGA Sbjct: 101 AEENFQRALRLAPNDPDLSNNYGWFLCQNGRANQSIPYFEAALRSKTYQSPAKALNNAGA 160 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CSL ++ AAERYF AF+++P +L T NL R+ ++R + ERARF+I K DVL+ Sbjct: 161 CSLILKDTVAAERYFNEAFRHDPGNLTTATNLARLNYERGDLERARFYINRVTKADVLSA 220 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLAIKIERK+G+++AEN LA QLR YP S+E+AAYQRGAF+E Sbjct: 221 EVLWLAIKIERKVGDRAAENSLATQLRRRYPDSAEFAAYQRGAFNE 266 >A4G4K0.1 A4G4K0_HERAR Putative uncharacterized protein Length = 265 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 129/226 (57%), Positives = 169/226 (74%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 +AD +KRA IRLQLAIGYY+Q Q + L+E LALQ +FA+AY M L M+MG +R Sbjct: 40 KADRQKRAAIRLQLAIGYYQQGQMNIALDEIKLALQTDSEFADAYSMAGLIYMDMGETRL 99 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 AE +F +A+RL+P +PD +NNYGWFLC N RA+ +I YFEAA+ Y SP KAL NAG Sbjct: 100 AEENFTRAIRLAPNDPDLSNNYGWFLCQNGRASLSIAYFEAAIRNKAYQSPAKALNNAGT 159 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CS+ ++AAAAERYF AF+YEP + TN NL R+ +DR +FERARF+I K DVL+ Sbjct: 160 CSMILKDAAAAERYFNEAFRYEPGNPTTNTNLARMNYDRGDFERARFYIVRVTKADVLSA 219 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLA+KIERK+G+++AE+ A QLR YP+S+E++AYQRGAF+E Sbjct: 220 EVLWLAVKIERKMGDRAAESSYATQLRRRYPNSNEFSAYQRGAFNE 265 >F1W2W1.1 F1W2W1_9BURK Type IV pilus biogenesis protein PilF Length = 266 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/226 (53%), Positives = 163/226 (72%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 + D ++RA IRL+LAI YY+Q Q V L+E AL + P+ ++AY +RAL M MG + Sbjct: 41 RTDNQRRAQIRLELAINYYQQGQLPVALDELKQALLSDPNLSDAYSVRALIYMNMGEIKL 100 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 A+ +F A+RL+P NP+ +NYGW+LC N RAAE+I YFEA + TY P KAL NAG Sbjct: 101 ADDNFRTAIRLAPNNPELTSNYGWYLCQNGRAAESIAYFEATLKSRTYQEPSKALNNAGL 160 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 CSLK + AAAERYF +AFQ++P + + ++L I+++R E+ERA+F+ G K DVL+V Sbjct: 161 CSLKLNDEAAAERYFKQAFQFDPTNASAMLSLANIHYNRREYERAQFYTGRLLKADVLSV 220 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 + LWLAI+ E KLGN++AEN L QLR YP+S+E+AAYQRGAFDE Sbjct: 221 EVLWLAIRTEHKLGNRTAENSLVTQLRRRYPASNEFAAYQRGAFDE 266 >Q21W26.1 Q21W26_RHOFD TPR repeat protein Length = 278 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 135/224 (60%) Query: 13 DARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQAE 72 DAR+RA IRL+LA+GY+EQ Q + L+E ++ A P F EAY +R L M + R +E Sbjct: 55 DARRRARIRLELAVGYFEQGQTTIALDELKQSIAADPTFGEAYNLRGLIYMRLNDFRFSE 114 Query: 73 ADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGACS 132 F +AL ++P N + +N GW LC +R E++ F A++ P Y K L G C Sbjct: 115 ESFRKALSINPQNSNIVHNLGWLLCQQARYPESMLMFSQALSNPQYGGRAKTLMAQGLCQ 174 Query: 133 LKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNVDA 192 + + AA AE ++++++ + T NL ++ F R +F RA+F++ +++ N ++ Sbjct: 175 IGAGQAADAEISLLKSYEFDAGNPVTAYNLAKLLFQRDDFVRAQFYVRRLNNSELANAES 234 Query: 193 LWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 LWL +K+ER++ N+ A +LA QL+ +P S E A+YQR AFDE Sbjct: 235 LWLGVKVERRMNNRDAMLQLATQLQKRFPQSREAASYQRSAFDE 278 >Q1LLI9.1 Q1LLI9_RALME Type IV pilus biogenesis protein PilF Length = 258 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 127/226 (56%) Query: 11 QADARKRADIRLQLAIGYYEQRQFAVTLEEADLALQAVPDFAEAYGMRALALMEMGRSRQ 70 Q A KRA IRL+LA Y E RQ++V L+E A+ P +AY +RAL M M + Sbjct: 33 QTPADKRASIRLRLATQYLEARQYSVALDEVKQAINIDPTLVDAYHVRALVYMGMNETAL 92 Query: 71 AEADFLQALRLSPGNPDFANNYGWFLCNNSRAAEAIPYFEAAVAQPTYLSPGKALANAGA 130 AE F AL + +PD NNYGWFLC N+R AEA + AV P+ P K L N GA Sbjct: 93 AEDSFRTALSMRDSDPDVLNNYGWFLCQNNRYAEAKAMLQRAVQAPSMNGPVKPLTNLGA 152 Query: 131 CSLKSQNAAAAERYFARAFQYEPASLATNVNLTRIYFDRSEFERARFHIGLAAKNDVLNV 190 C +++ + +A++ A+ Y+ A NL ++ F R E +A+ ++G + + Sbjct: 153 CEMRNGDLISAQKSLQTAYGYDRNDPALLTNLAQLSFQRGEMPQAKDYVGRVNSSRFASA 212 Query: 191 DALWLAIKIERKLGNQSAENELAAQLRPXYPSSSEYAAYQRGAFDE 236 +LWL +I R+ G+ +N L AQLR +P S E AY+RGA+DE Sbjct: 213 QSLWLGARIARRQGDTETQNALTAQLRSRFPDSRELTAYERGAWDE 258