BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0064.p (393 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZV3.1 D8IZV3_HERSS Ribosomal RNA large subunit methyltransfer... 746 0.0 A6SZX3.1 RLMN_JANMA Ribosomal RNA large subunit methyltransferas... 734 0.0 F1W2W0.1 F1W2W0_9BURK Putative uncharacterized protein 721 0.0 A4G4J9.1 RLMN_HERAR Ribosomal RNA large subunit methyltransferas... 711 0.0 Q8Y032.1 RLMN_RALSO Ribosomal RNA large subunit methyltransferas... 603 e-170 >D8IZV3.1 D8IZV3_HERSS Ribosomal RNA large subunit methyltransferase N EC=2.1.1.192 Length = 390 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/393 (90%), Positives = 371/393 (94%), Gaps = 3/393 (0%) Query: 1 MTTALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLS 60 M TALTNLLD+DPAQLVAYCGELGEKPFRAKQLQRWIHQ+GVADF +MTDLAKSLR+KL Sbjct: 1 MNTALTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLK 60 Query: 61 TRAHVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRF 120 TRA V APAIISDHTSTDGTRKWLVDVG GNAVETVFIPEENRGTLC+STQAGCAVNCRF Sbjct: 61 TRAEVRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRF 120 Query: 121 CSTGKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFE 180 CSTGKQGFNRNLSV EIIGQLWMAEFELRKTKG+E GPKGERQITNVVMMGMGEPLLNFE Sbjct: 121 CSTGKQGFNRNLSVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFE 180 Query: 181 PTVTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLI 240 PTVTAL+LMLDDNAYGLSRRRVTLSTSGVVPMI KLSQEC VALAVSLHASND LRD LI Sbjct: 181 PTVTALRLMLDDNAYGLSRRRVTLSTSGVVPMIGKLSQECPVALAVSLHASNDALRDSLI 240 Query: 241 PLNKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAA 300 PLN+K+PL+ELM ACKRYLEFAPRDF+TFEYCMLDGVND+D HARELV LV+ G + A Sbjct: 241 PLNRKHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEG---ETA 297 Query: 301 VPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE 360 +PCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE Sbjct: 298 IPCKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGE 357 Query: 361 VKDRTRVQERMQKMTEYQQKFGKDFGRIVEITG 393 VKDRTRVQERMQKM EYQ KFGKDFGRIVEI+G Sbjct: 358 VKDRTRVQERMQKMAEYQNKFGKDFGRIVEISG 390 >A6SZX3.1 RLMN_JANMA Ribosomal RNA large subunit methyltransferase N EC=2.1.1.192 Length = 387 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/390 (88%), Positives = 369/390 (94%), Gaps = 5/390 (1%) Query: 3 TALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTR 62 T LTNLLDLDPAQL+AYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL+TR Sbjct: 2 TTLTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATR 61 Query: 63 AHVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 122 A + APA+ISDHTS DGTRKWLVDVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCS Sbjct: 62 AIIAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCS 121 Query: 123 TGKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPT 182 TGKQGFNRNLSVGE+IGQLWMAEFELR+TKG+E GPKGERQITNVVMMGMGEPLLN+EPT Sbjct: 122 TGKQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPT 181 Query: 183 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPL 242 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQ+CAVALAVSLHASND LRDGL+PL Sbjct: 182 VTALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPL 241 Query: 243 NKKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVP 302 NKKYPL ELMAACKRYLEFAPRDFVTFEYCMLDGVNDSD HAREL+ LV+ +A VP Sbjct: 242 NKKYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVR-----QADVP 296 Query: 303 CKFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVK 362 CKFNLIPFNPFPESGL RSHNPRIKAFAQ+LMDAGIVTT+RKTRGDDIDAACGQLAGEV+ Sbjct: 297 CKFNLIPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEVQ 356 Query: 363 DRTRVQERMQKMTEYQQKFGKDFGRIVEIT 392 DRTRVQ+RM+KM EYQ+KFGK+FGRIVEI+ Sbjct: 357 DRTRVQDRMKKMAEYQEKFGKNFGRIVEIS 386 >F1W2W0.1 F1W2W0_9BURK Putative uncharacterized protein Length = 388 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/389 (87%), Positives = 364/389 (93%), Gaps = 3/389 (0%) Query: 4 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRA 63 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL+TRA Sbjct: 2 ALTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQFGASDFTAMTDLAKSLRDKLATRA 61 Query: 64 HVTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 123 V +PA+ISDHTSTDGTRKWL+DVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCST Sbjct: 62 VVQSPAVISDHTSTDGTRKWLLDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCST 121 Query: 124 GKQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTV 183 GKQGFNRNL+VGEIIGQLWMAEFELRKTKG+E GPKGERQITNVVMMGMGEPLLN+EPTV Sbjct: 122 GKQGFNRNLTVGEIIGQLWMAEFELRKTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTV 181 Query: 184 TALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPLN 243 TALKLMLDDNAYGLSRRRVTLSTSGVVP IDKL Q+C VALAVSLHASND LRD L+PLN Sbjct: 182 TALKLMLDDNAYGLSRRRVTLSTSGVVPNIDKLGQDCPVALAVSLHASNDALRDSLVPLN 241 Query: 244 KKYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVPC 303 KKYPL+ELMAAC RYLEFAPRDFVTFEYCMLDGVND++ HARELV LV+ G VPC Sbjct: 242 KKYPLKELMAACVRYLEFAPRDFVTFEYCMLDGVNDTEQHARELVALVRHGAQ---LVPC 298 Query: 304 KFNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKD 363 KFNLIPFNPFPESGL RS+NP+IK FAQ+LMDAGIVTTIRKTRGDDIDAACGQLAGEV+D Sbjct: 299 KFNLIPFNPFPESGLTRSNNPQIKLFAQVLMDAGIVTTIRKTRGDDIDAACGQLAGEVQD 358 Query: 364 RTRVQERMQKMTEYQQKFGKDFGRIVEIT 392 RT+VQERMQKM EYQQKFGKDFGR+VE+T Sbjct: 359 RTKVQERMQKMAEYQQKFGKDFGRLVEVT 387 >A4G4J9.1 RLMN_HERAR Ribosomal RNA large subunit methyltransferase N EC=2.1.1.192 Length = 386 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/379 (88%), Positives = 357/379 (94%), Gaps = 7/379 (1%) Query: 13 PAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRAHVTAPAIIS 72 PAQL+AYCGELGEKPFRAKQLQRWIHQ+G +DF MTDLAKSLR+KL TRA + APA+IS Sbjct: 13 PAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVIS 72 Query: 73 DHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132 DHTS+DGTRKWL+DVG GNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL Sbjct: 73 DHTSSDGTRKWLIDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132 Query: 133 SVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTVTALKLMLDD 192 SVGEIIGQLWMAEFELR+TKG+E GPKGERQITNVVMMGMGEPLLN+EPTVTALKLMLDD Sbjct: 133 SVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDD 192 Query: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPLNKKYPLQELM 252 NAYGLSRRRVTLSTSGVVPMIDKLSQ+CAVALAVSLHASND LRDGL+PLNKKYPLQELM Sbjct: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELM 252 Query: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVPCKFNLIPFNP 312 AACKRYLEFAPRDFVTFEYCMLDGVNDSD HAREL+ LV+ VPCKFNLIPFNP Sbjct: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRD-------VPCKFNLIPFNP 305 Query: 313 FPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQ 372 FPESGL RS+NPRIKAFAQ+LMD G+VTTIRKTRGDDIDAACGQLAGEV+DRTRVQ+RM+ Sbjct: 306 FPESGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRTRVQDRMK 365 Query: 373 KMTEYQQKFGKDFGRIVEI 391 KM EYQ+KFGK+FGRIVEI Sbjct: 366 KMAEYQEKFGKNFGRIVEI 384 >Q8Y032.1 RLMN_RALSO Ribosomal RNA large subunit methyltransferase N EC=2.1.1.192 Length = 383 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 291/379 (76%), Positives = 323/379 (85%), Gaps = 17/379 (4%) Query: 5 LTNLLDLDPAQLVAYCGELGEKPFRAKQLQRWIHQYGVADFAEMTDLAKSLREKLSTRAH 64 + NLLD D L+AYC LGEK FRAKQLQRWIHQ G ADF EMTDLAKSLREKL+TRA Sbjct: 4 MVNLLDFDAQGLLAYCESLGEKSFRAKQLQRWIHQSGAADFGEMTDLAKSLREKLATRAT 63 Query: 65 VTAPAIISDHTSTDGTRKWLVDVGNGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 124 + APA+ISDH S+DGTRKWLVDVG GNAVETV+IPEE RGTLC+S+QAGCAVNCRFCSTG Sbjct: 64 IQAPAVISDHLSSDGTRKWLVDVGAGNAVETVYIPEETRGTLCVSSQAGCAVNCRFCSTG 123 Query: 125 KQGFNRNLSVGEIIGQLWMAEFELRKTKGVEAGPKGERQITNVVMMGMGEPLLNFEPTVT 184 KQGF+RNLS GEI+GQLWMAEF +RK G GPK +R ITNVVMMGMGEPLLN++ V Sbjct: 124 KQGFSRNLSTGEIVGQLWMAEFAMRKQLG--RGPKDDRVITNVVMMGMGEPLLNYDAVVP 181 Query: 185 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECAVALAVSLHASNDTLRDGLIPLNK 244 A++LMLDDNAYGLSRRRVTLSTSGVVPM+D+LSQ+ VALAVSLHASND LRD L+PLNK Sbjct: 182 AMRLMLDDNAYGLSRRRVTLSTSGVVPMMDRLSQDLPVALAVSLHASNDALRDVLVPLNK 241 Query: 245 KYPLQELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDAHARELVELVQGGGDAKAAVPCK 304 KYPL ELMAAC+RYLEFAPRDF+TFEYCMLDGVNDS HAREL+ +V A VPCK Sbjct: 242 KYPLAELMAACRRYLEFAPRDFITFEYCMLDGVNDSVEHARELLRVV-------ADVPCK 294 Query: 305 FNLIPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDR 364 FNLIPFNPFPESGLKRS+N +I+ F+Q+L+DAGIVTTIRKTRGDDIDAACGQLAGEVKDR Sbjct: 295 FNLIPFNPFPESGLKRSNNEQIRRFSQVLLDAGIVTTIRKTRGDDIDAACGQLAGEVKDR 354 Query: 365 TRVQERMQKMTEYQQKFGK 383 TR+ ER KFGK Sbjct: 355 TRLAER--------GKFGK 365