BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0058.p (214 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4G4J4.1 A4G4J4_HERAR Putative Peptidase M23B 182 2e-44 D8IZV8.1 D8IZV8_HERSS NlpD lipoprotein 136 2e-30 A1VQF2.1 A1VQF2_POLNA Peptidase M23B 131 8e-29 A3RVB5.1 A3RVB5_RALSO NlpD 129 2e-28 C9Y6N6.1 C9Y6N6_9BURK Lipoprotein nlpD/lppB homolog EC=2.1.1.77 129 3e-28 >A4G4J4.1 A4G4J4_HERAR Putative Peptidase M23B Length = 304 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/241 (50%), Positives = 140/241 (58%), Gaps = 56/241 (23%) Query: 3 MKNNRLVWLGIVVSLLAGCSTTPRTAAPVVERTTSSAKPAADPAKNVATAAARPEGKGYY 62 MK R+ L ++V LA C TT R AAPV ERT A AKN A + + +Y Sbjct: 1 MKKFRITLLVLLVGSLAACGTTHR-AAPVTERTIG----GASTAKNTA------DDRNFY 49 Query: 63 TVKKGDTLYRIALESGQSYRDIVAWNNLTNANDIKVDQVLRVSPPD-------GVQTGAV 115 TVKKGDTLYRIAL+ GQSY ++V WN L N NDIKVDQVLRV+PPD G QTGAV Sbjct: 50 TVKKGDTLYRIALDFGQSYSELVTWNKLANPNDIKVDQVLRVAPPDAPAARSGGAQTGAV 109 Query: 116 V-----------APAAGASGI------EVRPLGASSSA------GAA------------- 139 APAA +G E RP S+ A GAA Sbjct: 110 ATGSGAEARPLSAPAASTAGNKTSPRGEKRPYSDSTLADMQKPEGAAVTTPPKAVASSDK 169 Query: 140 PAATXAAAA--GDDDAVSWMWPAEGKVVGTFDGGKKGVDIAGKSGQPVMAAGAGKVMYAG 197 PA AAAA + + VSWMWPAEGK+V TFD KKG+DIAGKSGQ V+AAGAGKVMYAG Sbjct: 170 PAEIPAAAATGAEYETVSWMWPAEGKLVATFDDNKKGIDIAGKSGQQVLAAGAGKVMYAG 229 Query: 198 A 198 + Sbjct: 230 S 230 >D8IZV8.1 D8IZV8_HERSS NlpD lipoprotein Length = 332 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/142 (61%), Positives = 101/142 (71%), Gaps = 7/142 (4%) Query: 3 MKNNRLVWLGIVVSLLAGCSTTP-RTAAPVVERTTSSAKPAADPAKNVATAAARPEGKGY 61 MK RL LG VVSLLA C +TP + APVVERT+S+ K D A A A G+GY Sbjct: 1 MKKIRLAVLGSVVSLLAACGSTPNQQPAPVVERTSSTGK-VVDAATAPAAPAP--SGRGY 57 Query: 62 YTVKKGDTLYRIALESGQSYRDIVAWNNLTNANDIKVDQVLRVSPPDGVQTGAVV--APA 119 YTVKKGDTLYRIALE+GQ++RDIVAWNNLTN NDIKVDQ LRV+PPD A A Sbjct: 58 YTVKKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPPDRAPGTAQTAAIAA 117 Query: 120 AGASGIEVRPLGA-SSSAGAAP 140 + A+G+EV+PLGA +SA AAP Sbjct: 118 SPAAGLEVKPLGAPGTSAPAAP 139 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 42/49 (85%), Positives = 47/49 (95%) Query: 150 DDDAVSWMWPAEGKVVGTFDGGKKGVDIAGKSGQPVMAAGAGKVMYAGA 198 DD+ VSWMWPAEGKVVGTF+GGKKGVDIAGK+GQ V+AAGAGKVMYAG+ Sbjct: 210 DDEGVSWMWPAEGKVVGTFEGGKKGVDIAGKAGQAVLAAGAGKVMYAGS 258 >A1VQF2.1 A1VQF2_POLNA Peptidase M23B Length = 301 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 12/188 (6%) Query: 20 GCSTTPRTAAPVVERTTSSAKPA-ADPAKNV--ATAAARPEGKGYYTVKKGDTLYRIALE 76 GC + + APV +R T ++PA DP K + A A +P GYY+VK+GDT+ RI LE Sbjct: 43 GCGSRSLSNAPVEDRGTGMSRPAPVDPVKLLPGAENAGKP---GYYSVKRGDTMIRIGLE 99 Query: 77 SGQSYRDIVAWNNLTNANDIKVDQVLRVSPPDGVQTGAVVAPAA-GASGIEVRPLGASSS 135 +GQ++RDI WNNL I+V QVLRV PP T AVV P G +G G+ + Sbjct: 100 NGQNWRDIARWNNLETPYLIEVGQVLRVVPPGSDGTQAVVRPVLPGLAGSAPVQGGSGAQ 159 Query: 136 AGAAPA----ATXAAAAGDDDAVSWMWPAEGKVVGTFDGGK-KGVDIAGKSGQPVMAAGA 190 A +AP + A++G D+ V W+WPA+G +V FD K KG+DI+GKSG PV+A+ Sbjct: 160 ASSAPVNGNGSASPASSGSDEDVGWIWPAQGPLVAGFDEAKNKGLDISGKSGDPVLASAD 219 Query: 191 GKVMYAGA 198 G+V+Y+GA Sbjct: 220 GRVVYSGA 227 >A3RVB5.1 A3RVB5_RALSO NlpD Length = 275 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 10/173 (5%) Query: 29 APVVERTTSSAKPAADPAKNVATAAARPEGKGYYTVKKGDTLYRIALESGQSYRDIVAWN 88 APV++RT+ + A A+ P GYY VK+GDTLY IAL +GQ+ RD+VAWN Sbjct: 39 APVLDRTSRAGSTPA--------ASQEPPPPGYYRVKRGDTLYSIALRNGQAPRDLVAWN 90 Query: 89 NLTNANDIKVDQVLRVSPPDG-VQTGAVVAPAAGASGIEVRPLGASSSAGAAPAATXAAA 147 N+ N N I+VDQ++RV PP+ V T VV +P+ ++ + + A++ A+A Sbjct: 91 NIANPNQIEVDQLIRVVPPNADVGTNGVVVTPVRPGNTTSQPIDSTPAVTSPVASSGASA 150 Query: 148 AGDDDAVSWMWPAEGKVVGTFDG-GKKGVDIAGKSGQPVMAAGAGKVMYAGAV 199 D A++ WPA G+V+G FD KG+DI GK G PV AA GKV++ G + Sbjct: 151 GATDGAIALAWPAHGQVIGRFDDKANKGIDIGGKRGDPVSAADDGKVIHVGPL 203 >C9Y6N6.1 C9Y6N6_9BURK Lipoprotein nlpD/lppB homolog EC=2.1.1.77 Length = 297 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 117/226 (51%), Gaps = 33/226 (14%) Query: 3 MKNNRLVW---LGIVVSLLAGCSTTPRTAAPVVERTTS------SAKPAADPAKNV--AT 51 M +R W +G V +LAGC + P T APV +R+ S P P K Sbjct: 1 MVGSRSFWVGAMGTAVLVLAGCGSKPITRAPVEDRSNQAPQQSVSTDPRTQPVKQPPGFE 60 Query: 52 AAARPEGKGYYTVKKGDTLYRIALESGQSYRDIVAWNNLTNANDIKVDQVLRVSPP---D 108 A +P GYYTVK GDTL RI LESGQS++DI WN L N N I+V QVLR+ PP + Sbjct: 61 NAGKP---GYYTVKPGDTLIRIGLESGQSHKDISRWNALENPNKIEVGQVLRIVPPVANE 117 Query: 109 GVQTGAVVAPAAGASGI---------------EVRPLGASSSAGAAPAATXAAAAGDDDA 153 V VVA + + + ++ ++ A A +G DD Sbjct: 118 TVSAKPVVAATSTTTALPPASNPAPAASTAASAPAKAASAPASAPAATPAPVAVSGGDDT 177 Query: 154 VSWMWPAEGKVVGTFDGGK-KGVDIAGKSGQPVMAAGAGKVMYAGA 198 V+WMWP G V+ FD K KGVDIAG +G PV+AA GKV+YAG+ Sbjct: 178 VAWMWPGNGAVLTGFDEVKNKGVDIAGNAGDPVLAAAEGKVVYAGS 223