BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0052.p         (159 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IZW2.1 D8IZW2_HERSS ATP-dependent DNA helicase protein EC=3.6.1.-   254   3e-66
A6SZY1.1 A6SZY1_JANMA ATP-dependent DNA helicase                      239   9e-62
F1VXG1.1 F1VXG1_9BURK DinG family ATP-dependent helicase YoaA         238   3e-61
A4G4J1.1 A4G4J1_HERAR Putative ATP-dependent helicase                 234   3e-60
D8NTC7.1 D8NTC7_RALSO Putative ATP-dependent helicase EC=3.6.1.-      206   9e-52

>D8IZW2.1 D8IZW2_HERSS ATP-dependent DNA helicase protein EC=3.6.1.-
          Length = 747

 Score =  254 bits (648), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 131/150 (87%)

Query: 5   EDTAASVPQGIHDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEA 64
           ED AA    G+HDAE++RLFGAGGPLGG VGSYRPRHAQTEMAKAIA AIAGQ TLIAEA
Sbjct: 43  EDAAAVAAPGVHDAEIDRLFGAGGPLGGAVGSYRPRHAQTEMAKAIATAIAGQGTLIAEA 102

Query: 65  GTGTGKTFAYLVPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSN 124
           GTGTGKTFAYLVPALLWGGK IVSTGTK LQDQL+ RDIPTVRKAL APVSVALLKGRSN
Sbjct: 103 GTGTGKTFAYLVPALLWGGKTIVSTGTKTLQDQLFNRDIPTVRKALHAPVSVALLKGRSN 162

Query: 125 YVCHFHLERTLQNGRMTSRDSALYXRVARR 154
           YVCHFHLERTLQNGR+T+R+   Y R   R
Sbjct: 163 YVCHFHLERTLQNGRLTAREDVGYLREISR 192


>A6SZY1.1 A6SZY1_JANMA ATP-dependent DNA helicase
          Length = 669

 Score =  239 bits (610), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 4   IEDTAASVP-QGIHDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIA 62
           + D  +++P    HDAE+++LFG   PLG  VGS+RPR +QTEMAKAIA AI+ QSTLIA
Sbjct: 1   MTDEPSALPVAATHDAEIDQLFGVDSPLGHAVGSFRPRQSQTEMAKAIAHAISNQSTLIA 60

Query: 63  EAGTGTGKTFAYLVPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGR 122
           EAGTGTGKTFAYLVPALLWGGKVIVSTGTKNLQDQL+LRDIP+VRKAL+APVSVALLKGR
Sbjct: 61  EAGTGTGKTFAYLVPALLWGGKVIVSTGTKNLQDQLFLRDIPSVRKALNAPVSVALLKGR 120

Query: 123 SNYVCHFHLERTLQNGRMTSRDSALYXRVARR 154
           +NYVCHFHLERTLQNGR+TSRD   Y R   R
Sbjct: 121 ANYVCHFHLERTLQNGRLTSRDDVGYLREISR 152


>F1VXG1.1 F1VXG1_9BURK DinG family ATP-dependent helicase YoaA
          Length = 673

 Score =  238 bits (606), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 121/139 (87%)

Query: 7   TAASVPQGIHDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGT 66
           T A  P G+HDA+VERLFG GG L   V  +R RHAQTEMAKAI  AIAGQ TLIAEAGT
Sbjct: 12  TVAPTPPGVHDADVERLFGEGGALSQAVRGFRSRHAQTEMAKAIGNAIAGQETLIAEAGT 71

Query: 67  GTGKTFAYLVPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYV 126
           GTGKTFAYLVPALLWGGKVI+STGTKNLQDQL+ RDIPTVRKAL+APVSVALLKGRSNY+
Sbjct: 72  GTGKTFAYLVPALLWGGKVIISTGTKNLQDQLFSRDIPTVRKALNAPVSVALLKGRSNYL 131

Query: 127 CHFHLERTLQNGRMTSRDS 145
           CHFHLERT QNGRMTSRD 
Sbjct: 132 CHFHLERTQQNGRMTSRDD 150


>A4G4J1.1 A4G4J1_HERAR Putative ATP-dependent helicase
          Length = 668

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 121/139 (87%)

Query: 16  HDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKTFAYL 75
           HDAE+++LFG   PLG  VG +RPR +QTEMAKAIA AI  QSTLIAEAGTGTGKTFAYL
Sbjct: 14  HDAEIDQLFGVDSPLGHAVGGFRPRQSQTEMAKAIAHAIVHQSTLIAEAGTGTGKTFAYL 73

Query: 76  VPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHLERTL 135
           VP+LLWGGKVI+STGTKNLQDQL+LRDIPTVRKAL APVSVALLKGR+NYVCHFHLERTL
Sbjct: 74  VPSLLWGGKVIISTGTKNLQDQLFLRDIPTVRKALGAPVSVALLKGRANYVCHFHLERTL 133

Query: 136 QNGRMTSRDSALYXRVARR 154
           QNGR+TSRD   Y R   R
Sbjct: 134 QNGRLTSRDDVGYLREISR 152


>D8NTC7.1 D8NTC7_RALSO Putative ATP-dependent helicase EC=3.6.1.-
          Length = 710

 Score =  206 bits (524), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 114/143 (79%)

Query: 12  PQGIHDAEVERLFGAGGPLGGQVGSYRPRHAQTEMAKAIAEAIAGQSTLIAEAGTGTGKT 71
           P  +HDAE+  LF   G L   + SYRPR +Q  MA+A+A AI    +LI EAGTGTGKT
Sbjct: 27  PTDLHDAELATLFADDGTLAQGIESYRPRASQLTMAQAVANAIEAADSLIVEAGTGTGKT 86

Query: 72  FAYLVPALLWGGKVIVSTGTKNLQDQLYLRDIPTVRKALSAPVSVALLKGRSNYVCHFHL 131
           +AYLVPA+LWGGKVI+STGTKNLQDQL+LRDIPTVRKAL+APVSVALLKGR+NYVCH+HL
Sbjct: 87  YAYLVPAMLWGGKVILSTGTKNLQDQLFLRDIPTVRKALNAPVSVALLKGRANYVCHYHL 146

Query: 132 ERTLQNGRMTSRDSALYXRVARR 154
           ERT QNGR++SR  A + R   R
Sbjct: 147 ERTSQNGRLSSRQDAAWLREINR 169