BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0001.p         (241 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2T578.1 Q2T578_BURTA Transcriptional regulator, LysR family          133   2e-29
C6BKX3.1 C6BKX3_RALP1 Transcriptional regulator, LysR family          133   2e-29
B2UJ79.1 B2UJ79_RALPJ Transcriptional regulator, LysR family          133   2e-29
E2SV44.1 E2SV44_9RALS Transcriptional regulator, LysR family          133   3e-29
Q1LAR2.1 Q1LAR2_RALME Transcriptional regulator, LysR-family          129   3e-28

>Q2T578.1 Q2T578_BURTA Transcriptional regulator, LysR family
          Length = 325

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 3/233 (1%)

Query: 1   MSLDANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLT 60
           M+ D N  +IF  V +AGS + AA+ L + ++ +S R+  +E +LG QLL RTTRR+GLT
Sbjct: 21  MAADPNDTLIFVRVVQAGSFTAAARLLRMPKTTVSRRVMTLEAQLGVQLLHRTTRRLGLT 80

Query: 61  EAGYRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANP 120
           EAG     H   MA  L +A+     L     G +R++ P + G+ W+ PLL  + QA P
Sbjct: 81  EAGSLYYSHCRNMAAQLDEAHAAVSQLQSGPRGWLRVTLPYSFGTTWIAPLLAGFRQAYP 140

Query: 121 RVQVDLRFSEQAVDITSDPVDLAIRVASTLPDDVVAKKLFGISWRLCASPDLAGRYAAEL 180
            V++++  S   +D+ +D +D+A+R+      D+VA++L   +  + ASP    R+    
Sbjct: 141 DVRLEILASHVPLDLVADEIDIALRLGVLADSDLVARRLGSFATGVYASPSYLMRHGVPE 200

Query: 181 AAGNLA---ALPLAGFSRSRQFTQPLISRGGVAMPLAKETVLLSNDLDVVREA 230
             G L    AL L    R+  +  PL   GG A   A + V++++D  ++ +A
Sbjct: 201 HPGELGAHRALTLHQARRAVGYAWPLRKPGGRAQYFALDPVIVASDPALIHDA 253


>C6BKX3.1 C6BKX3_RALP1 Transcriptional regulator, LysR family
          Length = 306

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 104/169 (61%)

Query: 3   LDANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEA 62
           +D N+L +F  +  AG+LS AA+ L  +RS +SHR+KA E  LG QLL RTTRRV  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GYRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRV 122
           G  + EH   +   +  A+ L   L +   G VR+S P  LG + + PLL+++ +A P +
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRAYPDI 120

Query: 123 QVDLRFSEQAVDITSDPVDLAIRVASTLPDDVVAKKLFGISWRLCASPD 171
           ++D+RF  +  D+  + VD+A+R+ S  P+ +VA  L  + W LCA+PD
Sbjct: 121 RLDVRFDNRVSDLIGEDVDVALRIVSNPPESLVATLLDEVDWVLCAAPD 169


>B2UJ79.1 B2UJ79_RALPJ Transcriptional regulator, LysR family
          Length = 306

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 104/169 (61%)

Query: 3   LDANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEA 62
           +D N+L +F  +  AG+LS AA+ L  +RS +SHR+KA E  LG QLL RTTRRV  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GYRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRV 122
           G  + EH   +   +  A+ L   L +   G VR+S P  LG + + PLL+++ +A P +
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRAYPDI 120

Query: 123 QVDLRFSEQAVDITSDPVDLAIRVASTLPDDVVAKKLFGISWRLCASPD 171
           ++D+RF  +  D+  + VD+A+R+ S  P+ +VA  L  + W LCA+PD
Sbjct: 121 RLDVRFDNRVSDLIGEDVDVALRIVSNPPESLVATLLDEVDWVLCAAPD 169


>E2SV44.1 E2SV44_9RALS Transcriptional regulator, LysR family
          Length = 306

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 105/169 (62%)

Query: 3   LDANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEA 62
           +D N+L +F  +  AG+LS AA+ L  +RS +SHR+KA E  LG QLL RTTRRV  TE 
Sbjct: 1   MDLNALKLFVEIVDAGNLSAAARRLQTTRSNVSHRLKAFERALGVQLLRRTTRRVEPTEV 60

Query: 63  GYRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRV 122
           G  + EH   +   +  A+ L   L +   G VR+S P  LG + + PLL+++ ++ P +
Sbjct: 61  GAGIYEHGRSILREMAAADALVSSLGKSLQGSVRLSVPTGLGHLLVSPLLVAFKRSYPDI 120

Query: 123 QVDLRFSEQAVDITSDPVDLAIRVASTLPDDVVAKKLFGISWRLCASPD 171
           ++D+RF  +  D+ S+ VD+A+R+ S  P+ +VA  L  + W LCA+PD
Sbjct: 121 RLDVRFDNRVSDLISEDVDVALRIVSNPPESLVATLLDEVDWVLCAAPD 169


>Q1LAR2.1 Q1LAR2_RALME Transcriptional regulator, LysR-family
          Length = 317

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 105/174 (60%), Gaps = 1/174 (0%)

Query: 3   LDANSLIIFCHVAKAGSLSKAAKALSLSRSALSHRIKAIEGRLGCQLLMRTTRRVGLTEA 62
           +D N+L +F  +  AG+LS AA+ L ++R+ +S+ +KA+E  LG QLL RTTR V  T  
Sbjct: 1   MDLNALRLFVDIVDAGNLSAAARKLKMTRANVSYHLKALEEELGVQLLRRTTRHVEPTPV 60

Query: 63  GYRLAEHADRMADILKDANMLAHGLNEDTAGLVRISAPLTLGSVWLKPLLMSYMQANPRV 122
           G  L EH   +   +  AN L   + +   G VR+S P  LG   + PLL+ + Q  P +
Sbjct: 61  GAGLYEHGKNILGEVAAANALISSMGKSLQGHVRLSVPTGLGHTMISPLLVRFKQRYPDI 120

Query: 123 QVDLRFSEQAVDITSDPVDLAIRVASTLPDDVVAKKLFGISWRLCASPD-LAGR 175
            +D+ F  +  ++ S+ V++A+R+ ST PD VVA ++ G+ W LCA+P  LAGR
Sbjct: 121 TLDVVFDNRIHNLVSEDVEVALRIISTPPDSVVATEIGGVDWLLCAAPSYLAGR 174