BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0157.p         (229 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IXW1.1 D8IXW1_HERSS Efflux transport, RND family, MFP subunit ...   255   4e-66
E6V7Q2.1 E6V7Q2_VARPD Efflux transporter, RND family, MFP subunit     214   6e-54
E8YTF8.1 E8YTF8_9BURK Efflux transporter, RND family, MFP subunit     181   7e-44
E1TDV3.1 E1TDV3_BURSG Efflux transporter, RND family, MFP subunit     181   8e-44
B1G049.1 B1G049_9BURK Efflux transporter, RND family, MFP subunit     179   2e-43

>D8IXW1.1 D8IXW1_HERSS Efflux transport, RND family, MFP subunit protein
          Length = 406

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/173 (69%), Positives = 150/173 (86%), Gaps = 2/173 (1%)

Query: 46  RALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTTR 105
           RALF+LSQTDPLRVY+NVPQSY+NL+K GQ+V VTQ+ELRG+KF+GKVARTA +ID  TR
Sbjct: 231 RALFVLSQTDPLRVYVNVPQSYANLVKPGQQVTVTQSELRGRKFEGKVARTAGAIDAATR 290

Query: 106 TMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIRL 165
           +MQVEV+L N D AL+PGAFVQVALP+KPSGAL+V+ D L+FRRDG +VAAVD  N++RL
Sbjct: 291 SMQVEVTLSNADHALLPGAFVQVALPIKPSGALLVAADTLMFRRDGTLVAAVDPHNQVRL 350

Query: 166 KRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAAETAAPKDKDK 218
           K+++LGRNFGQ+VEVL+G+ GDE LILNPSD++AEGD+V    E   PK+ +K
Sbjct: 351 KKLRLGRNFGQTVEVLDGLQGDEHLILNPSDALAEGDQVEPTLEQ--PKEPEK 401


>E6V7Q2.1 E6V7Q2_VARPD Efflux transporter, RND family, MFP subunit
          Length = 417

 Score =  214 bits (546), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 131/161 (81%)

Query: 46  RALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTTR 105
           RALF+L+QTDPLRVYINVPQ+Y+ L+K GQ VVVTQ ELRGQ F G+VART+ +ID TTR
Sbjct: 239 RALFMLAQTDPLRVYINVPQAYAQLVKAGQPVVVTQAELRGQTFKGEVARTSGAIDATTR 298

Query: 106 TMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIRL 165
            MQVEVSLPN DGAL+PGA+VQV+LPL  +  + V  + LLFR +G  +A VDA  +I L
Sbjct: 299 MMQVEVSLPNRDGALLPGAYVQVSLPLAAARTITVPANALLFRAEGTRIAVVDAQGRIGL 358

Query: 166 KRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSV 206
           + V LGRN+G++VEV++G+  ++R++LNPSDS+AEGD V+V
Sbjct: 359 RPVTLGRNYGENVEVIDGLGTNDRMVLNPSDSLAEGDVVTV 399


>E8YTF8.1 E8YTF8_9BURK Efflux transporter, RND family, MFP subunit
          Length = 407

 Score =  181 bits (459), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 121/164 (73%)

Query: 45  ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104
           +RALF L+Q+DPLRVY+ +PQ+Y+  +  GQKVVVTQ EL GQ+F G V   + +ID  T
Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGTVTHISGAIDVPT 294

Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164
           R++QVEV+LPNPD  L PGA+VQVALP       +V  + LLFR +G  +A VDA   ++
Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSIARAQWMVPGNALLFRAEGPRLAVVDAKGDVQ 354

Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVAA 208
           L+++ + ++ GQ++E+  GI+G++R+I+NPSDS+A+GD V +AA
Sbjct: 355 LRKIVIAQDLGQTLEIESGIDGNDRIIINPSDSIADGDHVEIAA 398


>E1TDV3.1 E1TDV3_BURSG Efflux transporter, RND family, MFP subunit
          Length = 407

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 120/163 (73%)

Query: 45  ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104
           +RALF L+Q+DPLRVY+ +PQ+Y+  +  GQKVVVTQ EL GQ+F G V   + +ID  T
Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGTVTHISGAIDVPT 294

Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164
           R++QVEV+LPNPD  L PGA+VQVALP       +V  + LLFR +G  VA VDA   ++
Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSVARAQWMVPGNALLFRAEGPRVAVVDANGNVQ 354

Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVA 207
           L++V + ++ GQ++E+  GI+G++++I+NPSDS+A+GD V +A
Sbjct: 355 LRKVVIAQDLGQTLEIESGIDGNDKVIINPSDSIADGDHVEIA 397


>B1G049.1 B1G049_9BURK Efflux transporter, RND family, MFP subunit
          Length = 407

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 120/163 (73%)

Query: 45  ARALFLLSQTDPLRVYINVPQSYSNLIKQGQKVVVTQTELRGQKFDGKVARTAASIDTTT 104
           +RALF L+Q+DPLRVY+ +PQ+Y+  +  GQKVVVTQ EL GQ+F G V   + +ID  T
Sbjct: 235 SRALFALAQSDPLRVYVQLPQAYAQNVSVGQKVVVTQAELPGQQFHGSVTHISGAIDVPT 294

Query: 105 RTMQVEVSLPNPDGALMPGAFVQVALPLKPSGALVVSTDVLLFRRDGAMVAAVDAGNKIR 164
           R++QVEV+LPNPD  L PGA+VQVALP       +V  + LLFR +G  +A VDA   ++
Sbjct: 295 RSLQVEVTLPNPDNTLRPGAYVQVALPSVARAEWMVPGNALLFRAEGPRLAVVDAKGNVQ 354

Query: 165 LKRVQLGRNFGQSVEVLEGINGDERLILNPSDSVAEGDEVSVA 207
           L+++ + ++ GQ++E+  GI+G++R+++NPSDS+A+GD V +A
Sbjct: 355 LRKIVIAQDLGQTLEIESGIDGNDRVVINPSDSIADGDHVEIA 397