BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0154.p         (97 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J1W6.1 D8J1W6_HERSS Multidrug resistance transmembrane efflux ...   141   4e-32
Q6FDN6.1 Q6FDN6_ACIAD Multidrug resistance secretion protein          128   3e-28
D0S8U5.1 D0S8U5_ACIJO Multidrug resistance secretion protein          126   1e-27
B1G565.1 B1G565_9BURK Secretion protein HlyD family protein           123   7e-27
E8PEL7.1 E8PEL7_ACIB1 RND family multidrug resistance secretion ...   123   8e-27

>D8J1W6.1 D8J1W6_HERSS Multidrug resistance transmembrane efflux pump protein
          Length = 411

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 78/93 (83%), Gaps = 2/93 (2%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEK 60
           MKAD+YG ++EYHG V G++GGTGSAFAVIPAQNATGNWIKVVQRLPVRIS+D KELA++
Sbjct: 314 MKADLYGGSVEYHGVVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQR 373

Query: 61  PLSVGLSMDVSIDTRG--KSGSGSENTAMNSSA 91
           PLSVGLSM V IDTRG  ++G     +A N +A
Sbjct: 374 PLSVGLSMVVEIDTRGQIQAGDAQRKSARNDNA 406


>Q6FDN6.1 Q6FDN6_ACIAD Multidrug resistance secretion protein
          Length = 378

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 66/77 (85%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEK 60
           + +D+YGS +EYHG V+G +GGTGSAFA+IPAQNATGNWIKVVQRLPVRI++D KELAE 
Sbjct: 302 LTSDLYGSDVEYHGKVIGFSGGTGSAFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH 361

Query: 61  PLSVGLSMDVSIDTRGK 77
           PL VGLSMD SID   K
Sbjct: 362 PLRVGLSMDASIDLSKK 378


>D0S8U5.1 D0S8U5_ACIJO Multidrug resistance secretion protein
          Length = 383

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 66/77 (85%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEK 60
           + +D+YG ++E+HGTV+G +GGTGSAFA+IPAQNATGNWIKVVQRLPVRI +D KELAE 
Sbjct: 307 LTSDLYGDSVEFHGTVLGFSGGTGSAFALIPAQNATGNWIKVVQRLPVRIQLDPKELAEH 366

Query: 61  PLSVGLSMDVSIDTRGK 77
           PL VGLSM+  ID + K
Sbjct: 367 PLRVGLSMEAQIDLKSK 383


>B1G565.1 B1G565_9BURK Secretion protein HlyD family protein
          Length = 440

 Score =  123 bits (309), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 64/80 (80%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEK 60
           + AD+YGS +EYHG VVG + GTGSAFA +PAQNATGNWIKVVQRLP RI +D+KEL   
Sbjct: 295 LTADVYGSKVEYHGRVVGFSAGTGSAFATLPAQNATGNWIKVVQRLPARIELDQKELQAH 354

Query: 61  PLSVGLSMDVSIDTRGKSGS 80
           PL +GLSM V +DTR  +G+
Sbjct: 355 PLRIGLSMQVDVDTRDSTGA 374


>E8PEL7.1 E8PEL7_ACIB1 RND family multidrug resistance secretion protein
          Length = 383

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 64/77 (83%)

Query: 1   MKADIYGSAIEYHGTVVGVAGGTGSAFAVIPAQNATGNWIKVVQRLPVRISIDRKELAEK 60
           + +D+YG  +EYHG VVG +GGTGSAFA+IPAQNATGNWIKVVQRLPVRI++D KELAE 
Sbjct: 307 LTSDLYGDDVEYHGKVVGFSGGTGSAFALIPAQNATGNWIKVVQRLPVRIALDPKELAEH 366

Query: 61  PLSVGLSMDVSIDTRGK 77
           PL VGLSM+  +D   K
Sbjct: 367 PLRVGLSMEAKVDLSAK 383