BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0151.p (212 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1W4.1 D8J1W4_HERSS Transcription regulator protein 231 6e-59 D8NHR1.1 D8NHR1_RALSO Putative transcription regulator protein, ... 186 2e-45 C4LCU3.1 C4LCU3_TOLAT Transcriptional regulator, TetR family 185 3e-45 Q8XRL6.1 Q8XRL6_RALSO Probable transcription regulator protein 183 1e-44 F0LRP1.1 F0LRP1_VIBFU Transcriptional regulator, TetR family 177 1e-42 >D8J1W4.1 D8J1W4_HERSS Transcription regulator protein Length = 200 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 113/200 (56%), Positives = 149/200 (74%), Gaps = 3/200 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKKSEERRQA+ID+AAE+FNEIGF+ ASMAEISAR+GGSKATLYNYF+SKEEIF++VM Sbjct: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 +Q G QFE LF L +D D++ L A YL ++ PE++AV+RL Y A +S+LG Sbjct: 61 KQVGCQFEELFMALRNED---DVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 + YE GPKRGW I+EF++ M+ G L DPWL A+Q+R L+EAEW E R+L V+T + Sbjct: 118 PLLYERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDI 177 Query: 191 PPAKIKASVERSLEAFFRIY 210 ++ AS +R++EAF +Y Sbjct: 178 AEDQLDASAQRAVEAFLYLY 197 >D8NHR1.1 D8NHR1_RALSO Putative transcription regulator protein, TetR family Length = 202 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 130/202 (64%), Gaps = 3/202 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKK+EE+RQ+IID A +F E+GFD+ASM++I+AR G SKATLYNYFSSKEE+F ++M Sbjct: 1 MRKKTEEKRQSIIDAALHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + FA L S + DTL +F YL+ IL P ++A+RRL +RS+LG Sbjct: 61 GTAADEIREAFAQL---KSSGPVADTLAVFGEHYLNAILRPSLVAIRRLAICEGDRSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YE+GPKRGW +++EF+ AM+ G L++ + + A L EAE E +LGV + Sbjct: 118 RAFYEHGPKRGWAMLAEFLGEAMEAGALKQRNTDIAAAHLHALYEAECVELCLLGVPVDI 177 Query: 191 PPAKIKASVERSLEAFFRIYGV 212 P +I V R+++ F YG Sbjct: 178 SPGRIAEGVARAVDVFMAAYGA 199 >C4LCU3.1 C4LCU3_TOLAT Transcriptional regulator, TetR family Length = 199 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 133/200 (66%), Gaps = 3/200 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MR KSE RRQAII+VA + F GF+ SM+EI++R+GGSKATLYNYFSSKEEIF VM+ Sbjct: 1 MRVKSEARRQAIIEVAKDAFIRQGFENTSMSEIASRVGGSKATLYNYFSSKEEIFAAVME 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + + F IL + S D+R TL F YLH IL+P+++A+R++ A+RSD+G Sbjct: 61 SSATEKIANAFKIL---EDSDDIRTTLTNFGMHYLHSILAPDIMAIRKMALNEADRSDIG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YENGPK+GW +IS ++++ +D+ +L D + A+ + L+EAE E LGVI Sbjct: 118 RHFYENGPKKGWELISNYLQKQIDQHNLSTCDAGICAMHLKALLEAELVEPYALGVIAPP 177 Query: 191 PPAKIKASVERSLEAFFRIY 210 +++ A V R++ F R Y Sbjct: 178 DESQLIAIVSRAITVFLRAY 197 >Q8XRL6.1 Q8XRL6_RALSO Probable transcription regulator protein Length = 207 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 129/201 (64%), Gaps = 3/201 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MRKK+EE+RQ+IID A +F E+GFD+ASM++I+AR G SKATLYNYFSSKEE+F ++M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A + FA L S + DTL +F YL+ IL P +A+RRL +RS+LG Sbjct: 61 GTAADEIREAFAQL---KSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDRSNLG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YE+GPK GW +++EF++ AM+ G L++ D + A L EAE E +LGV + Sbjct: 118 RAFYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDI 177 Query: 191 PPAKIKASVERSLEAFFRIYG 211 P +I V R+++ F YG Sbjct: 178 SPGRIAEGVARAVDVFMAAYG 198 >F0LRP1.1 F0LRP1_VIBFU Transcriptional regulator, TetR family Length = 199 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 129/202 (63%), Gaps = 3/202 (1%) Query: 11 MRKKSEERRQAIIDVAAEIFNEIGFDRASMAEISARLGGSKATLYNYFSSKEEIFLQVMK 70 MR KSEE+RQAI+++A F + GF++ SM+ I+ LGGSKATLYNYFSSKEEIF VMK Sbjct: 1 MRVKSEEKRQAILEIAKNSFTQQGFEQTSMSHIAKELGGSKATLYNYFSSKEEIFCAVMK 60 Query: 71 QQAGMQFESLFAILIEDDGSSDMRDTLRLFANKYLHLILSPEVIAVRRLLYYNAERSDLG 130 A Q F L D + ++R +L F +L +L+P+ +A+ R+ + A+RS +G Sbjct: 61 SSATEQIAQSFLSL---DPNREIRTSLLEFGYNFLSSVLTPDAMAIYRMAIHEADRSSIG 117 Query: 131 CMYYENGPKRGWLVISEFMKRAMDRGDLREADPWLTAIQFRVLVEAEWAEGRILGVITSM 190 +YENGPK GW+ +S+++ + +G L+ D W+ A+QF+ L+ AE E LG I Sbjct: 118 RHFYENGPKCGWIHLSDYIDSQVKKGTLKACDTWIAAMQFKALLSAEHIEPFALGAIEKP 177 Query: 191 PPAKIKASVERSLEAFFRIYGV 212 PA++KA+ R+++ F +Y Sbjct: 178 KPAELKATTLRAVDTFLTLYSA 199