BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0141.p         (110 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IV42.1 D8IV42_HERSS Transcription regulator protein                 191   3e-47
Q0K129.1 Q0K129_CUPNH Transcriptional regulator, LysR-family          173   7e-42
Q474B3.1 Q474B3_CUPPJ Transcriptional regulator, LysR family          161   3e-38
Q141P0.1 Q141P0_BURXL Transcriptional regulator, LysR family          123   1e-26
B9C4L9.1 B9C4L9_9BURK Transcriptional regulator, LysR family          119   2e-25

>D8IV42.1 D8IV42_HERSS Transcription regulator protein
          Length = 301

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query: 3   EDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACMRE 62
           EDGQRQWMSWQNWMA N + + RIEHQILSNQYP+LLQLAMEG G+VLAWRHMIDACM +
Sbjct: 195 EDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVLLQLAMEGQGVVLAWRHMIDACMEQ 254

Query: 63  GLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEES 104
           GLLVRAC+ASASLGGGYYAVWPRDRIEHAAAR+FR+WLV ES
Sbjct: 255 GLLVRACQASASLGGGYYAVWPRDRIEHAAARAFRSWLVAES 296


>Q0K129.1 Q0K129_CUPNH Transcriptional regulator, LysR-family
          Length = 310

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 92/109 (84%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           M +DGQRQWMSWQ W+A   L +A + + + SNQYPILLQLAMEGHGIVL WRHMIDAC+
Sbjct: 202 MLDDGQRQWMSWQTWLANQGLPDATLRNVLTSNQYPILLQLAMEGHGIVLGWRHMIDACL 261

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVAVA 109
           REGLLVRA EASASLGGGYYAVWPRDR+E AAAR+FR+WLV ++  A A
Sbjct: 262 REGLLVRASEASASLGGGYYAVWPRDRMEPAAARAFRSWLVRQATPAPA 310


>Q474B3.1 Q474B3_CUPPJ Transcriptional regulator, LysR family
          Length = 299

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 86/107 (80%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           M +DGQRQWMSWQ W A   + +A     + SNQYPILLQLA+EG GI L WRHMID C+
Sbjct: 193 MLDDGQRQWMSWQAWFAHQGVHDANPRAFLTSNQYPILLQLAIEGQGIALGWRHMIDGCL 252

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVA 107
           R+GLLVRACEASASLGGGYY VWPRDR+E AAAR+FRNW+V +++ A
Sbjct: 253 RDGLLVRACEASASLGGGYYVVWPRDRMEPAAARAFRNWMVRQASTA 299


>Q141P0.1 Q141P0_BURXL Transcriptional regulator, LysR family
          Length = 305

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 72/104 (69%)

Query: 1   MQEDGQRQWMSWQNWMAQNDLGEARIEHQILSNQYPILLQLAMEGHGIVLAWRHMIDACM 60
           +QEDGQRQWMSW  W   N +        ++ N YP L+Q+A+ G G+VL WRHMIDAC+
Sbjct: 193 VQEDGQRQWMSWSEWFRLNHVQMPASPQAVVVNHYPQLVQMAILGQGVVLGWRHMIDACL 252

Query: 61  REGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEES 104
            EGLLVRA +ASAS GGGYY V P DR ++ AAR F  W+ E++
Sbjct: 253 SEGLLVRATQASASHGGGYYVVSPNDRSQNQAARLFTRWVFEQA 296


>B9C4L9.1 B9C4L9_9BURK Transcriptional regulator, LysR family
          Length = 303

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 72/109 (66%), Gaps = 1/109 (0%)

Query: 3   EDGQRQWMSWQNWMAQNDLGEARIEHQ-ILSNQYPILLQLAMEGHGIVLAWRHMIDACMR 61
           EDGQRQWMSW  W  QND+   + + Q I  N YP ++Q+ + G G+ L WR+MIDAC+ 
Sbjct: 195 EDGQRQWMSWSEWFDQNDIDRPKAQPQDITINSYPQIVQMTILGQGVSLGWRYMIDACIE 254

Query: 62  EGLLVRACEASASLGGGYYAVWPRDRIEHAAARSFRNWLVEESAVAVAG 110
            GLLVR  +ASAS GGGYY + P DR ++ AAR F  WL E++   +A 
Sbjct: 255 AGLLVRVTDASASHGGGYYVISPNDRAQNQAARLFSRWLFEQAERQIAA 303