BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0124.p (230 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q46NH9.1 Q46NH9_CUPPJ Cyclic nucleotide-binding 300 1e-79 B2AJV5.1 B2AJV5_CUPTR Putative transcriptional regulator; Crp fa... 297 6e-79 Q12FQ3.1 Q12FQ3_POLSJ Transcriptional regulator, Crp/Fnr family 275 4e-72 E2STC2.1 E2STC2_9RALS Cyclic nucleotide-binding protein 220 9e-56 C6BMS8.1 C6BMS8_RALP1 Putative transcriptional regulator, Crp/Fn... 218 4e-55 >Q46NH9.1 Q46NH9_CUPPJ Cyclic nucleotide-binding Length = 228 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 136/225 (60%), Positives = 173/225 (76%) Query: 3 LSPELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIK 62 + L +F S W LT+ + R+ + FEK +G RG PADHW G++EG++K Sbjct: 1 MRATLASFFENSAWFDRLTDQEKARVMTDSFEKHLTAGGTACHRGAPADHWLGVVEGIVK 60 Query: 63 VDTVSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQS 122 VDT S GR+ TFA VP GAWFGEGAVLKNEPR YS+VA++DS++A+VPK TF WLL Q+ Sbjct: 61 VDTASACGRAITFASVPAGAWFGEGAVLKNEPRQYSVVALKDSRIAYVPKATFLWLLEQN 120 Query: 123 TSFSRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEE 182 +FSR+VIDQLN RCGYYV L+ N RL EA+ RVAFCL+ELF+ QLYPST++ L LSQEE Sbjct: 121 HTFSRYVIDQLNARCGYYVGLVHNLRLHEAAGRVAFCLTELFHRQLYPSTDRTLGLSQEE 180 Query: 183 IGRLSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFAH 227 IGRL+GLSRQNTNRALRELAD ++++EYG++ ++DL LR+FAH Sbjct: 181 IGRLTGLSRQNTNRALRELADAGMVAMEYGAIHVIDLEGLRQFAH 225 >B2AJV5.1 B2AJV5_CUPTR Putative transcriptional regulator; Crp family Length = 228 Score = 297 bits (761), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 173/225 (76%) Query: 3 LSPELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIK 62 + L +F S W LT+ + R+ + FEK +G RG PADHW G++EG++K Sbjct: 1 MRASLASFFGNSAWFDRLTDQEKARVMTDSFEKHLTAGGTACHRGAPADHWLGVVEGIVK 60 Query: 63 VDTVSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQS 122 VDT S GR+ TFA +P GAWFGEGAVLK+EPR YS+VA++DS++A+VPK TF WLL Q+ Sbjct: 61 VDTASACGRAITFASMPAGAWFGEGAVLKDEPRQYSVVALKDSRIAYVPKATFLWLLEQN 120 Query: 123 TSFSRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEE 182 +FSR+VIDQLN RCGYYV L+ N RL EA+ RVAFCL+ELF+ QLYPST++ L LSQEE Sbjct: 121 HTFSRYVIDQLNARCGYYVGLVHNLRLHEAAGRVAFCLTELFHRQLYPSTDRTLALSQEE 180 Query: 183 IGRLSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFAH 227 IGRL+GLSRQNTNRALRELAD ++++EYG++ ++DL LR+FAH Sbjct: 181 IGRLTGLSRQNTNRALRELADAGMVAMEYGAIQVIDLEGLRQFAH 225 >Q12FQ3.1 Q12FQ3_POLSJ Transcriptional regulator, Crp/Fnr family Length = 234 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 126/221 (57%), Positives = 170/221 (76%) Query: 6 ELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDT 65 +L+ FL S W L++DQ +R+ + ++F +G I R +P++HW +++G++KVDT Sbjct: 11 KLLKFLASSPWREGLSQDQFDRVCGDAVTRTFTAGATICLRESPSEHWLAVVDGLVKVDT 70 Query: 66 VSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSF 125 VS DGR+TTFAGVPGGAWFGEGAVLK EPRPY++VAIRDS +AFVP+ TF WLL S SF Sbjct: 71 VSADGRATTFAGVPGGAWFGEGAVLKGEPRPYAVVAIRDSTVAFVPRATFLWLLDNSHSF 130 Query: 126 SRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGR 185 SR++IDQLN R GYYVAL+E RL + + RVA+CL+ELFNPQLYP+T+ + +SQEEIGR Sbjct: 131 SRWLIDQLNARLGYYVALVEGLRLGDVNTRVAYCLAELFNPQLYPNTQLRIDISQEEIGR 190 Query: 186 LSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFA 226 L+G+ RQ RAL EL + L+ V+YGS+ ++DL L++FA Sbjct: 191 LTGMVRQTAYRALHELENAGLIRVQYGSIEVVDLEGLKKFA 231 >E2STC2.1 E2STC2_9RALS Cyclic nucleotide-binding protein Length = 234 Score = 220 bits (561), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 99/211 (46%), Positives = 145/211 (68%) Query: 16 WPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQDGRSTTF 75 W +L D+ +R I EK++A G I P+ T + W G++ G+IK+ TVS +GRS TF Sbjct: 23 WSIDLHPDEADRACAGIVEKTYARGACICPKNTLLESWTGVVTGLIKIGTVSPEGRSVTF 82 Query: 76 AGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFVIDQLNW 135 GVP G WFGEG VLKNEPR Y IVA+RD+++AF+ + TF WL+ S +F+RF++ QLN Sbjct: 83 TGVPAGGWFGEGTVLKNEPRRYDIVALRDTRMAFMDRATFMWLVENSVAFNRFLVKQLNE 142 Query: 136 RCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGLSRQNTN 195 R G+++AL+E RL + + R+A C++ LFNP LYP L ++QEE+G LSG++RQ N Sbjct: 143 RLGHFMALLEYDRLLDVTPRLARCIASLFNPVLYPGAGDHLEITQEELGLLSGMTRQVAN 202 Query: 196 RALRELADMKLLSVEYGSVVILDLSRLREFA 226 ++L+ L ++ +EYG V ++DL RLR + Sbjct: 203 QSLKALEKDGVVRLEYGGVTVVDLDRLRSYG 233 >C6BMS8.1 C6BMS8_RALP1 Putative transcriptional regulator, Crp/Fnr family Length = 234 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 98/211 (46%), Positives = 145/211 (68%) Query: 16 WPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQDGRSTTF 75 W +L ++ +R I EK++A G I P+ T + W G++ G+IK+ TVS +GRS TF Sbjct: 23 WSIDLPAEEADRACAGIVEKTYARGACICPKNTLLESWTGVVTGLIKIGTVSPEGRSVTF 82 Query: 76 AGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFVIDQLNW 135 GVP G WFGEG VLKNEPR Y IVA+RD+++AF+ + TF WL+ S +F+RF++ QLN Sbjct: 83 TGVPAGGWFGEGTVLKNEPRRYDIVALRDTRMAFMERATFMWLVENSVAFNRFLVKQLNE 142 Query: 136 RCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGLSRQNTN 195 R G+++AL+E RL + + R+A C++ LFNP LYP L ++QEE+G LSG++RQ N Sbjct: 143 RLGHFMALLEYDRLLDVTPRLARCIASLFNPVLYPGAGDHLEITQEELGLLSGMTRQVAN 202 Query: 196 RALRELADMKLLSVEYGSVVILDLSRLREFA 226 ++L+ L ++ +EYG V ++DL RLR + Sbjct: 203 QSLKTLEKDGVVRLEYGGVTVVDLDRLRSYG 233