BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0122.p (299 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISQ8.1 D8ISQ8_HERSS IclR family transcription regulator protein 448 e-124 B9TEJ5.1 B9TEJ5_RICCO Pca regulon regulatory protein, putative 355 5e-96 B9Z065.1 B9Z065_9NEIS Transcriptional regulator, IclR family 268 8e-70 D1RRS4.1 D1RRS4_SEROD Transcriptional regulatory protein 265 5e-69 Q9I6X7.1 Q9I6X7_PSEAE Transcriptional regulator PcaR 259 3e-67 >D8ISQ8.1 D8ISQ8_HERSS IclR family transcription regulator protein Length = 260 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 226/266 (84%), Positives = 242/266 (90%), Gaps = 6/266 (2%) Query: 34 LSIAEEIDALTDPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLR 93 ++IA+EIDALTDPSFMTSLARGLAVIRAF+DSRRSLTIAQISQKTGIPRAAVRRCLHTL+ Sbjct: 1 MTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 60 Query: 94 QLGYADADVNNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEV 153 QLGYAD+DVNNFSLRPKILTLGYSYLSSTPLTVS+QPYLNNISRTLGESCSLAVLDD EV Sbjct: 61 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 120 Query: 154 LYVARSAASRVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAM 213 LYVARSAASRVMSVALNT PA LGRAMLAHLPEDQLKAYF KVKLRA+ Sbjct: 121 LYVARSAASRVMSVALNTGSRLPAYCT------SLGRAMLAHLPEDQLKAYFDKVKLRAL 174 Query: 214 TDKTVVSQKRLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATR 273 T+KTVVSQKRLR+ILAGVR +GYA+IDEELEVGLRSIAVPVRGA GNV+AALNVG QA R Sbjct: 175 TEKTVVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAAR 234 Query: 274 VSRRQMEEQFLPVLKRGAEELSILLP 299 VS QMEE+ LPVL RGA+ELS+LLP Sbjct: 235 VSVAQMEEEILPVLLRGAQELSVLLP 260 >B9TEJ5.1 B9TEJ5_RICCO Pca regulon regulatory protein, putative Length = 271 Score = 355 bits (911), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 182/272 (66%), Positives = 219/272 (80%), Gaps = 8/272 (2%) Query: 28 PAAERSLSIAEEIDALTDPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRR 87 PAA R+ IAEEIDAL DP FMTSLARGLAV+RAFAD+R+ TIAQISQ+TGIPRAAVRR Sbjct: 8 PAAPRT--IAEEIDALADPDFMTSLARGLAVLRAFADTRKPQTIAQISQQTGIPRAAVRR 65 Query: 88 CLHTLRQLGYADADVNNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAV 147 CLHTLRQLGY DA++NNFSLRPK+LTLGYSYLSSTPLT ++QP LN +S+ LGES SLAV Sbjct: 66 CLHTLRQLGYVDAELNNFSLRPKVLTLGYSYLSSTPLTAAAQPCLNGVSKALGESSSLAV 125 Query: 148 LDDSEVLYVARSAASRVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGK 207 L++ +VLYVAR+A SRVMSV+L PA + LGR +LAHLP+D+L AY + Sbjct: 126 LEEDQVLYVARAATSRVMSVSLAAGSRLPAYCS------SLGRVLLAHLPQDELDAYLAR 179 Query: 208 VKLRAMTDKTVVSQKRLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNV 267 L MT++TV RLR+ILA VR DGYA+ +EELE+GLRSIAVPVRGA G V+AALNV Sbjct: 180 TTLTPMTERTVTDPARLRDILAQVRRDGYAVNNEELELGLRSIAVPVRGASGRVLAALNV 239 Query: 268 GVQATRVSRRQMEEQFLPVLKRGAEELSILLP 299 G A RV+ +M E+FLPVL++GA+EL++LLP Sbjct: 240 GAHAARVTPERMVEEFLPVLRQGAQELAMLLP 271 >B9Z065.1 B9Z065_9NEIS Transcriptional regulator, IclR family Length = 288 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 135/256 (52%), Positives = 187/256 (73%), Gaps = 7/256 (2%) Query: 45 DPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTLRQLGYADA-DVN 103 DP+FMTSLARGL VI+AF+ RR ++I+QISQKTGIPRAAVRRCL+TL +LG+ A D Sbjct: 39 DPNFMTSLARGLTVIQAFSQQRRLMSISQISQKTGIPRAAVRRCLYTLNKLGFVSAEDGR 98 Query: 104 NFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSEVLYVARSAASR 163 NF+LRP+IL+LG++YL+STPL ++QP L +IS TL ES S+A+LD ++LY+AR++ SR Sbjct: 99 NFALRPRILSLGHAYLASTPLAKAAQPVLRHISNTLNESSSIAILDGDDILYIARASTSR 158 Query: 164 VMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLRAMTDKTVVSQKR 223 +M++ L+ PA +GR +LA LP ++ +A+ + KL T T+++ Sbjct: 159 IMTIDLDIGSRLPAAYT------SMGRVLLASLPAEEREAHLARAKLIKYTSHTLITVDD 212 Query: 224 LREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQATRVSRRQMEEQF 283 LR L VR GYA++D+ELE+GLRSIAVP+ + G VVAA+N+GVQA RVS +E + Sbjct: 213 LRAELEKVRAQGYAIVDQELEIGLRSIAVPIAASDGKVVAAMNIGVQAGRVSLSDLETRI 272 Query: 284 LPVLKRGAEELSILLP 299 LPVL+ G+ ELS+LLP Sbjct: 273 LPVLRAGSNELSLLLP 288 >D1RRS4.1 D1RRS4_SEROD Transcriptional regulatory protein Length = 277 Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 143/280 (51%), Positives = 186/280 (66%), Gaps = 7/280 (2%) Query: 19 AGDDAADTIPAAERSLSIAEEIDALTDPSFMTSLARGLAVIRAFADSRRSLTIAQISQKT 78 A A D I + SLS A DP+FM SLARGL VI+AF RR ++I+QISQKT Sbjct: 2 AKTSAGDNIATHDISLSAASGDPFKGDPNFMASLARGLEVIQAFTPQRRLMSISQISQKT 61 Query: 79 GIPRAAVRRCLHTLRQLGYADA-DVNNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISR 137 GIPRAAVRRCL+TL +LG+ A D NF LRP+ILTL ++YL STPL ++QP L +IS+ Sbjct: 62 GIPRAAVRRCLYTLNKLGFVYAQDGKNFELRPRILTLAHAYLGSTPLAKATQPVLKHISQ 121 Query: 138 TLGESCSLAVLDDSEVLYVARSAASRVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLP 197 L ESCS+A LD +LY+AR++A R+M++ LN PA +GR +L+HLP Sbjct: 122 LLNESCSIATLDGDNILYIARASAERIMTIDLNIGSRLPAFAT------SMGRVLLSHLP 175 Query: 198 EDQLKAYFGKVKLRAMTDKTVVSQKRLREILAGVRDDGYALIDEELEVGLRSIAVPVRGA 257 D+ Y ++ L T T+ S +LRE L VR GYA+ D+ELE+GLRSIAVP+ A Sbjct: 176 ADKRDDYLQRITLMRYTQYTIGSIDKLREELDKVRSQGYAINDQELEIGLRSIAVPIMSA 235 Query: 258 GGNVVAALNVGVQATRVSRRQMEEQFLPVLKRGAEELSIL 297 G+V AALNVGVQA V ++ E+ LP+L GA+ELS+L Sbjct: 236 NGSVTAALNVGVQAGHVPVSELTERILPILLEGAQELSLL 275 >Q9I6X7.1 Q9I6X7_PSEAE Transcriptional regulator PcaR Length = 279 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 143/264 (54%), Positives = 189/264 (71%), Gaps = 8/264 (3%) Query: 34 LSIAEEIDALT-DPSFMTSLARGLAVIRAFADSRRSLTIAQISQKTGIPRAAVRRCLHTL 92 LS A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 93 RQLGYADADVNNFSLRPKILTLGYSYLSSTPLTVSSQPYLNNISRTLGESCSLAVLDDSE 152 QLGYA D +SL PK+LTLG++YLSSTPL +++QP L+ +S L E+CS+A L+ + Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 153 VLYVARSAA-SRVMSVALNTQPPPPAMLAHLPEDQXLGRAMLAHLPEDQLKAYFGKVKLR 211 VLY+ARSA R++SV LN PA +GR +LA L +D L AYFG V+++ Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCT------SMGRILLAALDDDALHAYFGGVEMQ 190 Query: 212 AMTDKTVVSQKRLREILAGVRDDGYALIDEELEVGLRSIAVPVRGAGGNVVAALNVGVQA 271 A T +T+ + + L L +R G+ ++D+ELEVGLRS+AVPVR + G+V+AALNVG A Sbjct: 191 AKTSRTLYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHA 250 Query: 272 TRVSRRQMEEQFLPVLKRGAEELS 295 RVSR ++E +FLP+L + ELS Sbjct: 251 GRVSRAELESRFLPLLLEASRELS 274