BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0109.p         (112 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6SXC5.1 A6SXC5_JANMA Transcriptional regulator, GntR family          150   6e-35
C5AK05.1 C5AK05_BURGB Transcriptional regulator, GntR family pro...   134   5e-30
F2LQS0.1 F2LQS0_BURGA Transcriptional regulator, GntR family pro...   132   1e-29
A2WIA1.1 A2WIA1_9BURK Transcriptional regulator                       125   2e-27
B1T7E9.1 B1T7E9_9BURK Transcriptional regulator, GntR family wit...   125   3e-27

>A6SXC5.1 A6SXC5_JANMA Transcriptional regulator, GntR family
          Length = 477

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 80/90 (88%)

Query: 1  MKTAPAPLELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTV 60
          MK     L+LSVDRTL+LP+YLQIC+RFKTAI +GHL AG RVPAVRALATE+NLARGTV
Sbjct: 1  MKKPKPALDLSVDRTLELPMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTV 60

Query: 61 ETAYRILTDEGYLQVRGAAGTVVSPALPTP 90
          E AYRILTDEGYLQVRGAAGT+VSP+LP P
Sbjct: 61 EMAYRILTDEGYLQVRGAAGTIVSPSLPQP 90


>C5AK05.1 C5AK05_BURGB Transcriptional regulator, GntR family protein
          Length = 492

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 69/81 (85%)

Query: 8  LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVETAYRIL 67
          L+L +DR LQLPIYLQIC RFK AI  GHLR G RVPAVR LATELN ARGT+ETAYRIL
Sbjct: 8  LKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTIETAYRIL 67

Query: 68 TDEGYLQVRGAAGTVVSPALP 88
           DEGYLQVRGAAGT VSP+LP
Sbjct: 68 IDEGYLQVRGAAGTYVSPSLP 88


>F2LQS0.1 F2LQS0_BURGA Transcriptional regulator, GntR family protein
          Length = 490

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 8  LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVETAYRIL 67
          L+L +DR+L+LP+YLQIC RFK AI  GHLR G RVPAVR LATELN ARGTVE AYRIL
Sbjct: 8  LKLDIDRSLRLPVYLQICERFKHAIGAGHLRPGDRVPAVRGLATELNTARGTVEMAYRIL 67

Query: 68 TDEGYLQVRGAAGTVVSPALP 88
           DEGYLQVRGAAGT VSP+LP
Sbjct: 68 VDEGYLQVRGAAGTYVSPSLP 88


>A2WIA1.1 A2WIA1_9BURK Transcriptional regulator
          Length = 531

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 1/85 (1%)

Query: 3   TAPAP-LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVE 61
           TAPAP L + +DR  QLPIYLQIC RF+TAIA GHLR G RVPA+R LAT+LN ARGTVE
Sbjct: 23  TAPAPTLTIEIDRRHQLPIYLQICERFRTAIAAGHLRPGDRVPALRGLATQLNTARGTVE 82

Query: 62  TAYRILTDEGYLQVRGAAGTVVSPA 86
            AY IL DEGYLQ+RGAAGT VSP+
Sbjct: 83  QAYTILVDEGYLQMRGAAGTFVSPS 107


>B1T7E9.1 B1T7E9_9BURK Transcriptional regulator, GntR family with
          aminotransferase domain
          Length = 499

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 69/88 (78%)

Query: 1  MKTAPAPLELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTV 60
          M     PL + +DR  +LP+YLQIC RFK AIA GHLR G RVPA+R LAT+LN+ARGTV
Sbjct: 1  MSAQTPPLAIEIDRHHELPVYLQICERFKAAIAAGHLRPGDRVPALRGLATQLNIARGTV 60

Query: 61 ETAYRILTDEGYLQVRGAAGTVVSPALP 88
          E AY IL DEGYLQ+RGAAGT V+P+LP
Sbjct: 61 EQAYTILVDEGYLQMRGAAGTFVAPSLP 88