BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0097.p (255 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q13LT0.1 Q13LT0_BURXL Transcriptional regulator, GntR family 308 5e-82 D5N8G9.1 D5N8G9_9BURK Transcriptional regulator, GntR family 307 1e-81 Q8XPY0.1 Q8XPY0_RALSO Probable transcription regulator protein 117 2e-24 D8N2H5.1 D8N2H5_RALSO Putative transcriptional regulator, GntR, ... 117 2e-24 B5SBS6.1 B5SBS6_RALSO Putative uncharacterized protein 115 6e-24 >Q13LT0.1 Q13LT0_BURXL Transcriptional regulator, GntR family Length = 249 Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 169/246 (68%), Positives = 197/246 (80%), Gaps = 2/246 (0%) Query: 1 MTPIDLSPAFVRLARYIHDRIIAGEWLPGQVLPGEEALAQDMKVSVGTVRKAFDVLSGQG 60 MT +DLSPAFVRLAR++ +RI+ GEW+PGQ+LPGEEALA+++KVSVGTVRKAFDVLSGQG Sbjct: 1 MTQLDLSPAFVRLARHMRERIVGGEWMPGQLLPGEEALAKELKVSVGTVRKAFDVLSGQG 60 Query: 61 LVTRHRGRGTFVTRATNERAFTSFYRLTDRADGVRRLPQDTLLLRERVAADADERAALKL 120 LV R RGRGTFV RATNERAFTSFYRL DR D +RRLP DT+LLRER AA DERAAL L Sbjct: 61 LVVRQRGRGTFVARATNERAFTSFYRLVDRRDDMRRLPVDTILLRERAAAREDERAALHL 120 Query: 121 DAGALVYRLRRLRVLDDTPLVLETISFPFARVGNKEWGADGAPFHLVYSFLEQQCGISVS 180 +AG LVYRLRRLR L +TPLVLE+I+FP+ARVG KEWG+D AP HLVYSFLEQQCG+SVS Sbjct: 121 EAGDLVYRLRRLRSLGETPLVLESIAFPYARVGGKEWGSDDAPAHLVYSFLEQQCGVSVS 180 Query: 181 RVEDRLRACLLPKKVAKDFGLPAG-PLPAAIRSCWRCAPAMICAANRW-SSGPHGWPRTR 238 RVEDRL+AC LP+ VA DFGLP+G P+ +IR + A + W S+ H + Sbjct: 181 RVEDRLQACALPEDVAVDFGLPSGQPVLLSIRVAFDLQGAPVEFRRSWASTQTHDYLSEL 240 Query: 239 TTISAN 244 I AN Sbjct: 241 RWIGAN 246 >D5N8G9.1 D5N8G9_9BURK Transcriptional regulator, GntR family Length = 250 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/246 (68%), Positives = 197/246 (80%), Gaps = 2/246 (0%) Query: 1 MTPIDLSPAFVRLARYIHDRIIAGEWLPGQVLPGEEALAQDMKVSVGTVRKAFDVLSGQG 60 MT +DLSPAFVRLAR++ +RI+ GEW+PGQ+LPGEEALA+++KVSVGTVRKAFDVLSGQG Sbjct: 2 MTQLDLSPAFVRLARHMRERIVGGEWMPGQLLPGEEALAKELKVSVGTVRKAFDVLSGQG 61 Query: 61 LVTRHRGRGTFVTRATNERAFTSFYRLTDRADGVRRLPQDTLLLRERVAADADERAALKL 120 LV R RGRGTFV RATNERAFTSFYRL DR D +RRLP DT+LLRER AA DERAAL+L Sbjct: 62 LVVRQRGRGTFVARATNERAFTSFYRLVDRRDDMRRLPVDTILLRERAAAREDERAALRL 121 Query: 121 DAGALVYRLRRLRVLDDTPLVLETISFPFARVGNKEWGADGAPFHLVYSFLEQQCGISVS 180 + G LVYRLRRLR L +TPLVLE+I+FP+ARVG KEWG+D AP HLVYSFLEQQCG+SVS Sbjct: 122 EPGDLVYRLRRLRSLGETPLVLESIAFPYARVGGKEWGSDDAPAHLVYSFLEQQCGVSVS 181 Query: 181 RVEDRLRACLLPKKVAKDFGLPAG-PLPAAIRSCWRCAPAMICAANRW-SSGPHGWPRTR 238 RVEDRL+AC LP+ +A DFGLPAG P+ +IR + A + W S+ H + Sbjct: 182 RVEDRLQACALPEDIAVDFGLPAGQPVLLSIRVAFDLQGAPVEFRRSWASTQTHDYLSEL 241 Query: 239 TTISAN 244 I AN Sbjct: 242 RWIGAN 247 >Q8XPY0.1 Q8XPY0_RALSO Probable transcription regulator protein Length = 240 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/187 (40%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 8 PAFVRLARYIHDR------IIAGEWLPGQVLPGEEALAQDMKVSVGTVRKAFDVLSGQGL 61 PA +RL RY R + +W PG +P E LA+ V+VGTVRKA DVL +GL Sbjct: 2 PADLRLPRYQQLRDDLAAQVARQQWRPGDAIPTEAELAKLYNVAVGTVRKAIDVLVAEGL 61 Query: 62 VTRHRGRGTFVTRATNERAFTSFYRLTDRADGVRRLPQDTLLLRERVAADADERAALKLD 121 + R +GRGTFV RA+ + F+R + G RR+P+ +L R+ + A + A L+++ Sbjct: 62 LERFQGRGTFVRRASFASSLFRFFRFQNE-RGERRIPESRILKRDVLDAPSAPAAGLQIE 120 Query: 122 AGALVYRLRRLRVLDDTPLVLETISFPFARVGNKEWGADGAPFHLVYSFLEQQCGISVSR 181 GA V RL RLR+LD PL+ E I P+ R GA L+Y E+QCG V+ Sbjct: 121 TGAPVIRLTRLRLLDAAPLLAEEIWLPYDRFEPLATLEPGAFGDLLYPLYEKQCGQIVAS 180 Query: 182 VEDRLRA 188 E+ L A Sbjct: 181 AEETLTA 187 >D8N2H5.1 D8N2H5_RALSO Putative transcriptional regulator, GntR, HTH, UbiC domains Length = 240 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 110/206 (53%), Gaps = 13/206 (6%) Query: 8 PAFVRLARYIHDR------IIAGEWLPGQVLPGEEALAQDMKVSVGTVRKAFDVLSGQGL 61 PA +RL RY R I +W PG +P E LA+ V+VGTVRKA DVL +GL Sbjct: 2 PADLRLPRYQQLRDDLAAQIARQQWRPGDAIPTEAELAKLYNVAVGTVRKAIDVLVAEGL 61 Query: 62 VTRHRGRGTFVTRATNERAFTSFYRLTDRADGVRRLPQDTLLLRERVAADADERAALKLD 121 + R +GRGTFV RA+ + F+R G RR+P+ +L R+ + A + A L+++ Sbjct: 62 LERFQGRGTFVRRASFASSLFRFFRFQSE-RGERRIPESRILKRDVLDAPSAPAAGLQIE 120 Query: 122 AGALVYRLRRLRVLDDTPLVLETISFPFAR---VGNKEWGADGAPFHLVYSFLEQQCGIS 178 G V RL RLR+LD PL+ E I P+AR + E A G L+Y E QCG Sbjct: 121 TGTPVIRLTRLRLLDSAPLLAEEIWLPYARFEPLATLELSAFG---DLLYPLYETQCGQI 177 Query: 179 VSRVEDRLRACLLPKKVAKDFGLPAG 204 V+ E+ L A + A+ + AG Sbjct: 178 VASAEETLTAEAVNAAYARLLRIQAG 203 >B5SBS6.1 B5SBS6_RALSO Putative uncharacterized protein Length = 240 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 121/242 (50%), Gaps = 27/242 (11%) Query: 8 PAFVRLARYIHDR------IIAGEWLPGQVLPGEEALAQDMKVSVGTVRKAFDVLSGQGL 61 PA +RL RY R I +W PG +P E LA+ V+VGTVRKA DVL +GL Sbjct: 2 PADLRLPRYQQLRDDLAAQIARQQWRPGDAIPTEAELAKLYNVAVGTVRKAVDVLVAEGL 61 Query: 62 VTRHRGRGTFVTRATNERAFTSFYRLTDRADGVRRLPQDTLLLRERVAADADERAALKLD 121 + R +GRGTFV RA+ + F+R + A G RR+P+ +L R+ + A + A L+++ Sbjct: 62 LERFQGRGTFVRRASFASSLFRFFRFQN-ARGERRVPESRILKRDVLDAPSAPSAGLQIE 120 Query: 122 AGALVYRLRRLRVLDDTPLVLETISFPFAR---VGNKEWGADGAPFHLVYSFLEQQCGIS 178 G V RL RLR+LD PL+ E I P+ R + E A G L+Y E QCG Sbjct: 121 TGTPVIRLTRLRLLDGAPLLAEEIWLPYDRFEALATLELDAFG---DLLYPLYETQCGQI 177 Query: 179 VSRVEDRLRACLLPKKVAKDFGLPAGPLPAAIRSCWRCAPAMIC--AANRWSSGPHGWPR 236 V+ E+ L A + A+ + AG P M+ A + P W R Sbjct: 178 VASAEETLTAEAVNATYARLLRIQAGD------------PVMVIERVARGYDRVPLEWRR 225 Query: 237 TR 238 +R Sbjct: 226 SR 227