BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0088.p (307 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1LDK9.1 Q1LDK9_RALME Putative transcriptional regulator, LysR f... 276 2e-72 B3RA50.1 B3RA50_CUPTR Putative transcriptional regulator, LysR 266 4e-69 Q0K1R6.1 Q0K1R6_CUPNH Transcriptional regulator, LysR-family 261 8e-68 E8YTF5.1 E8YTF5_9BURK Transcriptional regulator, LysR family 242 4e-62 B5WE85.1 B5WE85_9BURK Transcriptional regulator, LysR family 242 7e-62 >Q1LDK9.1 Q1LDK9_RALME Putative transcriptional regulator, LysR family Length = 301 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/293 (48%), Positives = 192/293 (65%), Gaps = 8/293 (2%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 ++RY KTF+ AA GSFS+AGARLGLTQSAVS QIRRLE++L C LF R GK+V +SE G Sbjct: 14 LLRYFKTFLVAAETGSFSSAGARLGLTQSAVSTQIRRLEEDLGCTLFDRSGKSVTLSEEG 73 Query: 61 KQLFVTAEEIVRLFESMKG---QTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLV 117 +Q+ A IV L+ESMKG Q D A +D+GA+STVQ LLP + F P Sbjct: 74 RQMLADASRIVALYESMKGARLQRDTA----PLDLGAVSTVQASLLPRAMQRFRVAFPDT 129 Query: 118 EVNVVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSI 177 VN+VPG S QL++Q+D+ +L +AV+++P L + LKW +++E +V +AP A + Sbjct: 130 HVNIVPGMSTQLLTQVDARELDIAVLVKPRLGIPPELKWVPLVKERFVAVAPKGA-PADL 188 Query: 178 KSLLESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPY 237 K+LL + PF+RY+R S GGQLVDRYLKR RL V + MELDEP VI++MV +GLG AIIP Sbjct: 189 KTLLSTVPFIRYNRHSTGGQLVDRYLKRHRLWVREGMELDEPAVILQMVGEGLGCAIIPC 248 Query: 238 DLAAGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAK 290 +L A V +P+ G +REIGVL R + + L++ A + Sbjct: 249 ELVPLAQTPNVEQVPMPGMPMYREIGVLVRQSALKRASAAALIDAFVAACHER 301 >B3RA50.1 B3RA50_CUPTR Putative transcriptional regulator, LysR Length = 297 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/291 (47%), Positives = 188/291 (64%), Gaps = 1/291 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRY +TF+ AA GSFS A ARL LTQSAVS QIRRLE++L+C LF R GK+V +SE G Sbjct: 1 MIRYFQTFLTAAEAGSFSAAAARLALTQSAVSTQIRRLEEDLDCRLFERTGKSVVLSEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 +L A +V L+ +MK + A +++GA+STVQ LL + F + P VN Sbjct: 61 HRLLPEARRLVELYAAMKDRAGPHADAAPVELGAVSTVQSTLLAEAMRHFRERFPDSHVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPG S QL++Q+D+ +L +AV+IRP L + LKW ++RE +V IAP A +++L Sbjct: 121 VVPGMSTQLLTQVDARELDVAVLIRPRLGLPPELKWVPLVRERFVGIAPAGA-PRELRAL 179 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 +E+ PF+RY+R S GGQLVD+YLKR RL V + MELDEP VI++MV GLG AIIP +L Sbjct: 180 VEALPFIRYNRHSTGGQLVDQYLKRQRLWVREGMELDEPAVILQMVAAGLGCAIIPAELV 239 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAKE 291 V +PL GG +RE+GVL R + V L++ A+ ++ Sbjct: 240 PLREAAGVVQVPLPGGPLYREVGVLVRESALRRAPVEALIDAFVAASARRQ 290 >Q0K1R6.1 Q0K1R6_CUPNH Transcriptional regulator, LysR-family Length = 294 Score = 261 bits (667), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 141/295 (47%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRY +TF+ AA GSFS A ARL LTQSAVS QIRRLE++L+C LF R GK+VA+SE G Sbjct: 1 MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 ++L A V L+ +MK + A +++GA+STVQ LL + F P VN Sbjct: 61 RRLVPEARRFVELYAAMKDRAGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPG S QL++Q+D+ +L +AV+IRP L LKW ++RE +V I P A +++L Sbjct: 121 VVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLVREGFVGIGPAGA-PADLRAL 179 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 LE+ PF+RY+R S GGQLVD YLKR RL V + MELDEP VI+ MV GLG AIIP L Sbjct: 180 LETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLV 239 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAKEESSM 295 V PL GG +R++GVL R + V+ L++ AA A+ +S++ Sbjct: 240 PLQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFV-AASARWQSAV 293 >E8YTF5.1 E8YTF5_9BURK Transcriptional regulator, LysR family Length = 291 Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 123/291 (42%), Positives = 190/291 (65%), Gaps = 2/291 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 M+ L+T IA ++ G+FS AGAR+GLTQSAVS Q++RLEDEL LF R G++ +++ G Sbjct: 1 MLAELRTLIAVSQYGTFSAAGARIGLTQSAVSAQMQRLEDELGFALFDRTGRSATLNDAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 ++ V AEEI+ L+ + + +AA G + +GAI++ Q+ L LA F ++ P + Sbjct: 61 RETLVLAEEIIALYARLSERGALAAESGMLRVGAIASAQVSFLADALARFREDHPGWRIR 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTS-AR-ETSIK 178 VVPG S+ L+ Q+DS +L LAV+I+P + L+W T++ E +V++ P + AR + S + Sbjct: 121 VVPGVSLNLLGQVDSGELDLAVIIKPPFALPSELEWRTLVTEPFVLLVPKALARGKRSWR 180 Query: 179 SLLESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYD 238 LL+S PF+RY R S+GG+LVDR+L+R RL V++ +ELDE I+++V +G+G+A+IP Sbjct: 181 ELLKSEPFIRYDRTSFGGRLVDRFLRRARLNVHEVLELDELQAIVQLVARGIGIALIPDT 240 Query: 239 LAAGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQA 289 G + L L+ F REIG++QR + V + L +CI AAQA Sbjct: 241 AGLGKWPAGIAALSLDEATFHREIGLVQRPRHSRQAVAAALADCIGSAAQA 291 >B5WE85.1 B5WE85_9BURK Transcriptional regulator, LysR family Length = 291 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 129/291 (44%), Positives = 186/291 (63%), Gaps = 2/291 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 M+ L+TFIA ++ G+FS AGAR+GLTQSAVS Q++RLE+EL +LF R G++ ++E G Sbjct: 1 MLNELRTFIAVSQYGTFSGAGARIGLTQSAVSAQMQRLEEELGFQLFDRTGRSATINEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 ++ AEE++ L+ + + AA G + +GAI++ Q+ LL LA F + P + Sbjct: 61 RETLALAEEMMTLYARLSERGGGAAESGMLRVGAIASAQVSLLADALARFRDDRPGWRIR 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTS-ARET-SIK 178 VVPG S+ L+ Q+DS +L LAV+I+P + L+W T++ E +V++AP AR S + Sbjct: 121 VVPGVSLGLLGQVDSGELDLAVIIKPPFALPSELEWRTLVAEPFVLLAPKKLARGGRSWR 180 Query: 179 SLLESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYD 238 LL S PF+RY R S+GG+LVDR+L+R RL V D +ELDE I+++V +G+GVA+IP Sbjct: 181 ELLRSEPFIRYDRASFGGRLVDRFLRRARLTVRDAVELDELQAIVQLVARGMGVALIPNT 240 Query: 239 LAAGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQA 289 G V L L F REIG++QR + VV L ECIA AAQ Sbjct: 241 AGLGKWPASVVALELGDATFEREIGLVQRPRHSRPVVADALAECIAGAAQG 291