BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0081.p (359 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0G4.1 D8J0G4_HERSS Methyl-accepting chemotaxis transducer tra... 324 1e-86 C5TCI4.1 C5TCI4_ACIDE Methyl-accepting chemotaxis sensory transd... 309 3e-82 Q21WA5.1 Q21WA5_RHOFD Methyl-accepting chemotaxis sensory transd... 309 4e-82 A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein 289 5e-76 A1W2E0.1 A1W2E0_ACISJ Methyl-accepting chemotaxis sensory transd... 283 3e-74 >D8J0G4.1 D8J0G4_HERSS Methyl-accepting chemotaxis transducer transmembrane protein Length = 536 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/357 (51%), Positives = 251/357 (70%) Query: 1 MKRLSNMKIGDRLAIGFAIILALSIVSTGIGIWRMQVVSKVTRAMVDESVRKERLISSLN 60 M + NM IG RL +GFA+IL SI+ GIG+WR+ V++ TR M+ E ++ ERL++ Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 TNLRGGILRTIAILRSTDQMLNAFFLNEDLIAKKDAIALQKQIGPLLVSDEEKQLYKQVL 120 TNL GI RTIAI +S+D L +F E + K + QKQ+ LL + EEK L++++ Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EQQVNYAKINFHLMELKSNGDAEEGNQILVQEFVPASKRYQATLQKLLEWEQAEIDKTSL 180 E + Y + + K+ G+ EE +IL Q FVP + YQ T++KL+++++ E+D T+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 QIDVIAAQSRILLLIVEVAALLFGVSCAWLLTRSIVWPLRQAVEISRKVADGDLTTEIQI 240 +ID IAA+SR L+L++E LL G+ A LT I PL +AV++SR VA+GDL++EI + Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 KRTDEVGQLLMSLQGMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALE 300 DE GQLL SL+ MN +LR IV+NVR+GT TI+TAS EIAAGN+DLSSRTE QAS+L Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLA 300 Query: 301 ETASAMEELISTVRSNADNAREASELASSASSIAIEGGNAVDNMVQTMGEINASSHQ 357 ETASAMEELISTVR NADNAR+AS+LA+SAS++A +GG V +V TMG INASS + Sbjct: 301 ETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRK 357 >C5TCI4.1 C5TCI4_ACIDE Methyl-accepting chemotaxis sensory transducer (Fragment) Length = 527 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 162/354 (45%), Positives = 237/354 (66%) Query: 4 LSNMKIGDRLAIGFAIILALSIVSTGIGIWRMQVVSKVTRAMVDESVRKERLISSLNTNL 63 + N+KIG RL GFA++LAL ++ T G+WR+Q V++ T M + + ER+IS + Sbjct: 1 MKNLKIGTRLGGGFALVLALMVLMTLFGLWRLQTVAQATNDMTQQPLAMERMISDWYRYV 60 Query: 64 RGGILRTIAILRSTDQMLNAFFLNEDLIAKKDAIALQKQIGPLLVSDEEKQLYKQVLEQQ 123 G RT AI++STD L FF + ++ +++ LQ +I PLL + EK+L+ + + + Sbjct: 61 YSGARRTTAIVKSTDPSLAGFFAEDAAMSTRESGKLQDRIEPLLSNPAEKELWVTIKKAR 120 Query: 124 VNYAKINFHLMELKSNGDAEEGNQILVQEFVPASKRYQATLQKLLEWEQAEIDKTSLQID 183 V Y ++ K++G EE + L Q ++PA+++Y A +Q+LL+ ++A ID T+ I Sbjct: 121 VTYLSSRDQAVKAKADGQLEEAERTLTQVYLPAAEKYMALIQQLLDLQRASIDATAKDIQ 180 Query: 184 VIAAQSRILLLIVEVAALLFGVSCAWLLTRSIVWPLRQAVEISRKVADGDLTTEIQIKRT 243 + A+SR+ L+++ V A+ G CAW LT I PL +AV ++R VAD DLTT +++ Sbjct: 181 GVYAESRMWLMLLCVLAVAVGGVCAWWLTHGITRPLSEAVRVARAVADNDLTTTVEVHSR 240 Query: 244 DEVGQLLMSLQGMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETA 303 DE GQL+ +LQ MNT+L +V VR GT IATAS +I AGN DLSSRTE QAS+LEETA Sbjct: 241 DETGQLMEALQHMNTSLAQVVGRVRAGTEGIATASNQIDAGNQDLSSRTEQQASSLEETA 300 Query: 304 SAMEELISTVRSNADNAREASELASSASSIAIEGGNAVDNMVQTMGEINASSHQ 357 ++MEEL STVR NADNAR+A++LASSAS +A++GG V ++V TM INASS + Sbjct: 301 ASMEELTSTVRQNADNARQANQLASSASQVAMQGGQVVAHVVDTMSAINASSRK 354 >Q21WA5.1 Q21WA5_RHOFD Methyl-accepting chemotaxis sensory transducer Length = 583 Score = 309 bits (792), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 165/357 (46%), Positives = 229/357 (64%) Query: 1 MKRLSNMKIGDRLAIGFAIILALSIVSTGIGIWRMQVVSKVTRAMVDESVRKERLISSLN 60 MK ++MKIG RL GFA++LA +++ TGIG+W++ + TR M E + KERLIS + Sbjct: 1 MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPLAKERLISDWS 60 Query: 61 TNLRGGILRTIAILRSTDQMLNAFFLNEDLIAKKDAIALQKQIGPLLVSDEEKQLYKQVL 120 N+ ++RT A+ +S+D L FF K AL KQI PLL S EEK L+ +V Sbjct: 61 RNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALLKQIEPLLSSQEEKDLFSKVS 120 Query: 121 EQQVNYAKINFHLMELKSNGDAEEGNQILVQEFVPASKRYQATLQKLLEWEQAEIDKTSL 180 + + Y + +LK++G A+E N++L ++PA+ Y + + L ++ +D ++ Sbjct: 121 DVRKAYLSSRDQVTKLKADGQADEANRLLESTYIPAADNYMKLVSEFLGLQRKNLDAKAV 180 Query: 181 QIDVIAAQSRILLLIVEVAALLFGVSCAWLLTRSIVWPLRQAVEISRKVADGDLTTEIQI 240 +I I SR L+ + L FGV CAWLLT I PL AV ++R+VADGDL T+IQ Sbjct: 181 EISGIETTSRNYLVALAALVLTFGVICAWLLTVGITGPLTNAVAVARRVADGDLATDIQT 240 Query: 241 KRTDEVGQLLMSLQGMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALE 300 + DE QLL +L M NL IV NVR G+ +ATAS EIA GN DLS+RTE QASALE Sbjct: 241 EGKDETAQLLQALSAMKDNLARIVGNVRQGSEGVATASAEIAQGNNDLSARTEQQASALE 300 Query: 301 ETASAMEELISTVRSNADNAREASELASSASSIAIEGGNAVDNMVQTMGEINASSHQ 357 ETA++MEEL +TVR NADNAR+A++LA SAS++AI+GG V +V+TM IN SS + Sbjct: 301 ETAASMEELSATVRQNADNARQANQLAQSASTVAIKGGEVVSRVVETMKGINDSSKK 357 >A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein Length = 566 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 160/358 (44%), Positives = 234/358 (65%), Gaps = 8/358 (2%) Query: 4 LSNMKIGDRLAIGFAIILALSIVSTGIGIWRMQVVSKVTRAMVDESVRKERLISSLNTNL 63 SNMKIG RL +GF ++LALSI GI ++ VS +TR+M++ + KER++S Sbjct: 4 FSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAIT 63 Query: 64 RGGILRTIAILRSTDQMLNAF---FLNEDLIAKKDAIALQKQIGPLLVSDEEKQLYKQVL 120 + I RTI + +S D L F F +D K ++ + +++ PLL +D+EK+LY ++L Sbjct: 64 KASIARTIGVAKSADPALAQFSAKFAADD---SKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 121 EQQVNYAKINFHLMELKSNGDAEEGNQILVQEFVPASKRYQATLQKLLEWEQAEIDKTSL 180 + + ++ +M+LK+ G E + F+PA+ ++ + +E E+ ++D + Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 181 QI-DVIAAQSRILLLIVEVAALLFGVSCAWLLTRSIVWPLRQAVEISRKVADGDLTTEIQ 239 Q+ DV AA +R L+L+ + L FG+ CAW LT I PL+ AV+ +R+VA GDLT +I+ Sbjct: 181 QLSDVEAASTRQLMLLSAMV-LAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIK 239 Query: 240 IKRTDEVGQLLMSLQGMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASAL 299 + DE GQLL +L+ MN L+ IV VR GT TI TAS EIAAGN+DLSSRTE QAS+L Sbjct: 240 AESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSL 299 Query: 300 EETASAMEELISTVRSNADNAREASELASSASSIAIEGGNAVDNMVQTMGEINASSHQ 357 EETAS+MEEL STV+ NADNAR+A++LA SAS +A++GG+ V +VQTM IN SS + Sbjct: 300 EETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRK 357 >A1W2E0.1 A1W2E0_ACISJ Methyl-accepting chemotaxis sensory transducer Length = 579 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 162/354 (45%), Positives = 231/354 (65%) Query: 4 LSNMKIGDRLAIGFAIILALSIVSTGIGIWRMQVVSKVTRAMVDESVRKERLISSLNTNL 63 + N+ IG RL GFA++L L + T G+WR+Q V++ T M + + ER+IS + Sbjct: 1 MKNLSIGTRLGGGFALVLLLMALMTAFGVWRLQTVAQATNEMTQQPLAVERMISDWYRYV 60 Query: 64 RGGILRTIAILRSTDQMLNAFFLNEDLIAKKDAIALQKQIGPLLVSDEEKQLYKQVLEQQ 123 RT AI++STD L FF + + +++ LQK+I LL SDEEK L+ + + + Sbjct: 61 YSAARRTSAIVKSTDPSLGQFFAADTATSTRESAELQKRIETLLTSDEEKALWADIQKAR 120 Query: 124 VNYAKINFHLMELKSNGDAEEGNQILVQEFVPASKRYQATLQKLLEWEQAEIDKTSLQID 183 V Y ++ K+ G EE ++L Q ++PA+ +Y A +Q+LL+ ++A ID T+ I+ Sbjct: 121 VTYLSSRDQAVKAKAEGQLEEAERLLTQVYLPATDQYVALIQRLLDMQRARIDATAQGIN 180 Query: 184 VIAAQSRILLLIVEVAALLFGVSCAWLLTRSIVWPLRQAVEISRKVADGDLTTEIQIKRT 243 V QSR+ L+++ V L G CAW LTR I PL QAV+++R VA DLT+ +Q+ Sbjct: 181 VTYGQSRLWLIVLGVLGLGAGALCAWWLTRGITRPLAQAVQVARAVAANDLTSRVQVDSR 240 Query: 244 DEVGQLLMSLQGMNTNLRNIVNNVRTGTVTIATASREIAAGNMDLSSRTESQASALEETA 303 DE GQLL +LQ MN +L +V VR+GT IATAS ++ AGN DLSSRTE QAS+L+ETA Sbjct: 241 DETGQLLQALQEMNASLSQVVARVRSGTDGIATASSQLDAGNQDLSSRTEEQASSLQETA 300 Query: 304 SAMEELISTVRSNADNAREASELASSASSIAIEGGNAVDNMVQTMGEINASSHQ 357 ++ME+L STVR NADNAR+A++LASSA+ A +GG V +VQTMG INASS + Sbjct: 301 ASMEQLTSTVRQNADNARQANQLASSAAQTATQGGQVVAGVVQTMGAINASSRK 354