BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0076.p (282 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value E2MML6.1 E2MML6_PSESM Transcriptional regulator, LysR-family 277 1e-72 D8J006.1 D8J006_HERSS LysR family transcription regulator protein 234 1e-59 Q0K3K8.1 Q0K3K8_CUPNH Transcriptional regulator, LysR-family 212 5e-53 Q1CZ75.1 Q1CZ75_MYXXD Transcriptional regulator, LysR family 212 6e-53 D8MYH1.1 D8MYH1_RALSO Putative transcriptional regulator, LysR-f... 206 3e-51 >E2MML6.1 E2MML6_PSESM Transcriptional regulator, LysR-family Length = 296 Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 126/276 (45%), Positives = 195/276 (70%) Query: 1 VAEAARKLNIVQPALSRQIHDLEEQLGTQLFQRSIRGTQLTVAGVQFMKDCSKLLIDLED 60 V++AAR L+IVQPALSRQI +LE+ LG LF+RS +G +LT AG QF++D ++ DL++ Sbjct: 21 VSKAARHLHIVQPALSRQIRELEQDLGVDLFRRSSKGVELTPAGEQFIRDARAIMTDLQN 80 Query: 61 AKKRALRAASGKLGSLRIGISPNHTAHPELLKRLRRFREICPDVALMLEPALSPRQLLDV 120 A++R R A+G+ G+LRIGI+PN++ HP +L+ LR F+ + PD+ LMLEPAL+ RQ L + Sbjct: 81 ARERVARIANGQYGALRIGIAPNYSWHPSILRPLREFKRLQPDITLMLEPALAARQQLKI 140 Query: 121 KEERMDGGFIAFRDLADKQLSGIKVLRSGLMLAVSSDHKYAEQPPDRLSEMKDEPCVWFP 180 + ++DGGF+A+RD + LSG+ + L+LAV D + PP L++++++ CVWF Sbjct: 141 ADGKLDGGFLAWRDPENPVLSGLAMFNCRLVLAVPRDSELHLSPPMHLADLQNQQCVWFS 200 Query: 181 RDRAPEYHDYLIQQCMAAGLTPKQILVGTDVGTTLGMVAAGMGYSIVSEASKYNSPNGVV 240 RD+AP Y+D+LI C AGL+P+ + +G D+ T LG+V AGMGYSIV ++S+YN P+ V Sbjct: 201 RDKAPSYYDFLINSCHVAGLSPQLVHLGADINTVLGLVGAGMGYSIVPDSSQYNCPSEVA 260 Query: 241 LHQHADIPDIHDVEFIFLSENDSPILRAFAEVMNDG 276 L H ++ ++ +EF++ S+++ P L + G Sbjct: 261 LVPHPELTGLYTIEFVWRSDSEDPALWRLVDHFKSG 296 >D8J006.1 D8J006_HERSS LysR family transcription regulator protein Length = 309 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/271 (44%), Positives = 168/271 (61%), Gaps = 5/271 (1%) Query: 1 VAEAARKLNIVQPALSRQIHDLEEQLGTQLFQRSIRGTQLTVAGVQFMKDCSKLLIDLED 60 VAEAAR+L+I QPALSRQI LEE+LG LF RS+RG LT AG Q + D ++L DL++ Sbjct: 18 VAEAARRLHIAQPALSRQIKYLEEELGAALFDRSVRGATLTAAGQQLVIDARRMLADLQE 77 Query: 61 AKKRALRAASGKLGSLRIGISPNHTAHPELLKRLRRFREICPDVALMLEPALSPRQLLDV 120 ++R R A G G+LR+GI+PN HP +L LR F + P +A+ LEP LS RQL + Sbjct: 78 TRQRVARVAEGLEGNLRMGITPNFGWHPRILGSLRHFHQAEPQIAVSLEPGLSARQLERI 137 Query: 121 KEERMDGGFIAFRDLADKQLSG-----IKVLRSGLMLAVSSDHKYAEQPPDRLSEMKDEP 175 + +D GF+A+R + Q I+V L LA+ D + A Q P L+ + DEP Sbjct: 138 RSGDLDAGFLAWRYPPNDQFLAHEFGEIQVFECRLKLALPRDSQLARQVPRHLAALHDEP 197 Query: 176 CVWFPRDRAPEYHDYLIQQCMAAGLTPKQILVGTDVGTTLGMVAAGMGYSIVSEASKYNS 235 +WFP + AP Y +L QC L P++ + +DV + LG+VAAG+GY+IVS+ S Y Sbjct: 198 AIWFPAEVAPGYDQFLNYQCQMVNLVPRKAQLASDVLSILGLVAAGVGYAIVSDVSAYTC 257 Query: 236 PNGVVLHQHADIPDIHDVEFIFLSENDSPIL 266 P GVVL H ++ H V F++ ++N +P L Sbjct: 258 PEGVVLVDHPELTLRHPVSFVYRADNGNPTL 288 >Q0K3K8.1 Q0K3K8_CUPNH Transcriptional regulator, LysR-family Length = 302 Score = 212 bits (540), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 111/282 (39%), Positives = 167/282 (59%) Query: 1 VAEAARKLNIVQPALSRQIHDLEEQLGTQLFQRSIRGTQLTVAGVQFMKDCSKLLIDLED 60 V AR + IVQPALSRQI +LE +GT L R RG QLTVAG F++D ++LL +L+ Sbjct: 21 VVAGARAVGIVQPALSRQIIELEAAIGTPLLARKARGVQLTVAGESFLRDATQLLANLQA 80 Query: 61 AKKRALRAASGKLGSLRIGISPNHTAHPELLKRLRRFREICPDVALMLEPALSPRQLLDV 120 ++ RALR A+G+LG LR+G+ PN+ + + + LR FR CP+V ++++P LS Q+ + Sbjct: 81 SRDRALRCAAGQLGELRLGVLPNYLSSAVVTEVLRAFRIACPEVKVLVDPMLSTEQIAAI 140 Query: 121 KEERMDGGFIAFRDLADKQLSGIKVLRSGLMLAVSSDHKYAEQPPDRLSEMKDEPCVWFP 180 + ++DGG +A+R L+GI +L +LA+ S + P RL+++ D P VWF Sbjct: 141 RNRQVDGGIMAWRRHEAPHLTGIVLLSDRFVLAMPSSQTARHKQPKRLADVADLPFVWFD 200 Query: 181 RDRAPEYHDYLIQQCMAAGLTPKQILVGTDVGTTLGMVAAGMGYSIVSEASKYNSPNGVV 240 R+ H +L+ QC AG +P+ VG+D+ T LG+V+AGMG + V + P V Sbjct: 201 PARSSSQHRFLMTQCERAGFSPRVAQVGSDIPTVLGLVSAGMGCAFVPASLSTVCPPTVR 260 Query: 241 LHQHADIPDIHDVEFIFLSENDSPILRAFAEVMNDGGSDSQS 282 L ++ D DVEF F E +P +R F + + D S Sbjct: 261 LVPLPEVADRFDVEFAFDEEVATPAVRQFVQALQQVIDDRAS 302 >Q1CZ75.1 Q1CZ75_MYXXD Transcriptional regulator, LysR family Length = 299 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 109/265 (41%), Positives = 163/265 (61%) Query: 5 ARKLNIVQPALSRQIHDLEEQLGTQLFQRSIRGTQLTVAGVQFMKDCSKLLIDLEDAKKR 64 AR L IVQPALSRQI +LEE +GT L R G LT AG F++D ++LL +L+ +++R Sbjct: 25 ARALGIVQPALSRQIRELEEAVGTPLLIRRSTGIALTAAGASFLQDATRLLAELQASRER 84 Query: 65 ALRAASGKLGSLRIGISPNHTAHPELLKRLRRFREICPDVALMLEPALSPRQLLDVKEER 124 ALR+A+G+LG LR+G+ PN+ P + L+ FR CPDV L + P LS Q + Sbjct: 85 ALRSAAGQLGELRLGVLPNYFPLPMVSNVLKAFRSACPDVMLSITPMLSAEQATAISRGD 144 Query: 125 MDGGFIAFRDLADKQLSGIKVLRSGLMLAVSSDHKYAEQPPDRLSEMKDEPCVWFPRDRA 184 +DGG +A+R LSG+++LR +LA+ S + P +L+E+ P VWF R+ Sbjct: 145 LDGGIMAWRQSEAPHLSGMRLLRDRFVLAMLSTPGQRFRAPRQLAELAGAPFVWFDPLRS 204 Query: 185 PEYHDYLIQQCMAAGLTPKQILVGTDVGTTLGMVAAGMGYSIVSEASKYNSPNGVVLHQH 244 +H +L++QC AG TP+ VG+D+ T +G+VAAGMGY+ V E+ P V L Sbjct: 205 AAHHRFLLEQCRRAGFTPRIAQVGSDIPTLIGLVAAGMGYAFVPESISPTCPRTVRLVPI 264 Query: 245 ADIPDIHDVEFIFLSENDSPILRAF 269 ++ DVEF++ + +SP+++ F Sbjct: 265 DELDGRFDVEFVYDGQANSPVVQQF 289 >D8MYH1.1 D8MYH1_RALSO Putative transcriptional regulator, LysR-family Length = 304 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 163/273 (59%) Query: 1 VAEAARKLNIVQPALSRQIHDLEEQLGTQLFQRSIRGTQLTVAGVQFMKDCSKLLIDLED 60 V AR + IVQPALSRQI +LEE +GT L R +G LT AG F++D +LL DL Sbjct: 21 VMAGARVVGIVQPALSRQIRELEEAVGTPLLVRKAKGVALTAAGASFLRDAKQLLADLRG 80 Query: 61 AKKRALRAASGKLGSLRIGISPNHTAHPELLKRLRRFREICPDVALMLEPALSPRQLLDV 120 ++ RALR A+G+LG LR+G+ PN+ P + + L+ FR CPDV +++EP LS Q+ + Sbjct: 81 SRDRALRCAAGQLGELRLGVLPNYLTLPTVTQALQVFRASCPDVRVVVEPMLSAEQVAAI 140 Query: 121 KEERMDGGFIAFRDLADKQLSGIKVLRSGLMLAVSSDHKYAEQPPDRLSEMKDEPCVWFP 180 ++DGG +A+R LSG+ +LR +LA+ + + P RL+++ ++ VWF Sbjct: 141 ASHQLDGGVMAWRSDEASHLSGVVLLRDRFVLAMPASPGRRRKAPARLADLTEQSFVWFD 200 Query: 181 RDRAPEYHDYLIQQCMAAGLTPKQILVGTDVGTTLGMVAAGMGYSIVSEASKYNSPNGVV 240 R+ +H +L+ Q AG TP+ G+D+ T +G+V+AGMG + V E+ P V Sbjct: 201 PVRSAAHHRFLMAQLERAGFTPRISQTGSDIPTLIGLVSAGMGCAFVPESLSAVCPTTVR 260 Query: 241 LHQHADIPDIHDVEFIFLSENDSPILRAFAEVM 273 L ++ D +DVEF F E +P++ F + + Sbjct: 261 LVPLDEVADRYDVEFAFDGEATAPVVSRFLDAL 293