BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0046.p         (191 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVQ6.1 D8IVQ6_HERSS Two component response regulator protein        191   4e-47
E5AKX0.1 E5AKX0_BURRH Transcriptional regulatory protein qseB         159   1e-37
D9Y4W6.1 D9Y4W6_9BURK DNA-binding response regulator                  159   3e-37
F2L8Z0.1 F2L8Z0_BURGA DNA-binding response regulator                  157   6e-37
E3HWS8.1 E3HWS8_ACHXA Transcriptional regulatory protein QseB 1       157   9e-37

>D8IVQ6.1 D8IVQ6_HERSS Two component response regulator protein
          Length = 218

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 105/114 (92%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LLVEDD MVGEA RKGLRQDGFA+DWVQDG +A +ALR EDYA++LLDLGLPQK+GL
Sbjct: 1   MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           AVL+ LR  GN +PVLITTARDAVADRVAGLDAGADDYLIKP+DLEELSARMRA
Sbjct: 61  AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRA 114


>E5AKX0.1 E5AKX0_BURRH Transcriptional regulatory protein qseB
          Length = 333

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 93/114 (81%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LLVEDD M+ E  RK LR DG+AVDWVQDGAAA LA   E Y L+LLDLGLPQ++GL
Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            VL+ +RA  +  PVLI TARDAVADRV GLDAGADDYL+KP+DL+EL ARMRA
Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRA 228


>D9Y4W6.1 D9Y4W6_9BURK DNA-binding response regulator
          Length = 218

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILLVEDD M+GEA   GL+ +G+AVDWV+DG +A +AL    ++LV+LDLGLP K+GL
Sbjct: 1   MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           AVL+E+R   N  PVL+TTARD V DR+ GLDAGADDYLIKPYDL+ELSAR+RA
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRA 114


>F2L8Z0.1 F2L8Z0_BURGA DNA-binding response regulator
          Length = 233

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 94/114 (82%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILLVEDD M+ E  RK L+ DGFAVDWVQDG AA  A+  E Y L+LLDLGLP+++G+
Sbjct: 14  MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            VL+ LR+ G+ +PVLI TARDAV+DRV GLDAGADDYL+KP+DL+EL ARMRA
Sbjct: 74  DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRA 127


>E3HWS8.1 E3HWS8_ACHXA Transcriptional regulatory protein QseB 1
          Length = 219

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 98/114 (85%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILLVEDDLM+GE+    LR + +AVDWV+DG AA LALR + Y L+LLDLGLP+++GL
Sbjct: 1   MRILLVEDDLMIGESVLDFLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKRDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           ++L++LRA  ++ PVLI TARDAV+DR+AGLDAGADDY++KPYD++EL ARMRA
Sbjct: 61  SLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRA 114