BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0045.p         (50 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVQ6.1 D8IVQ6_HERSS Two component response regulator protein         98   5e-19
E6V0R7.1 E6V0R7_VARPD Two component transcriptional regulator, w...    86   2e-15
C5CYQ2.1 C5CYQ2_VARPS Two component transcriptional regulator, w...    83   1e-14
C7RRM3.1 C7RRM3_ACCPU Two component transcriptional regulator, w...    82   2e-14
A1TU69.1 A1TU69_ACIAC Two component transcriptional regulator, w...    82   2e-14

>D8IVQ6.1 D8IVQ6_HERSS Two component response regulator protein
          Length = 218

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVP 49
           LSRAQLEEKLYGWDD ++SNA+EVHIHALRKK+GSDFIKNVRG+GYLVP
Sbjct: 169 LSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217


>E6V0R7.1 E6V0R7_VARPD Two component transcriptional regulator, winged helix
           family
          Length = 219

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 45/50 (90%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEKLY W D + SNA+EV++H LRKKLG++FI+NVRG+GY+VPK
Sbjct: 169 LSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAEFIRNVRGVGYMVPK 218


>C5CYQ2.1 C5CYQ2_VARPS Two component transcriptional regulator, winged helix
           family
          Length = 219

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEKLY W D + SNA+EV++H LRKKLG++ I+NVRG+GY+VPK
Sbjct: 169 LSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAELIRNVRGVGYMVPK 218


>C7RRM3.1 C7RRM3_ACCPU Two component transcriptional regulator, winged helix
           family
          Length = 220

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 47/50 (94%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRA+LEEKLYGW D ++SNA+EV+IH+LR+KLG++ IKN+RG+GYLVP+
Sbjct: 169 LSRARLEEKLYGWGDEIESNAVEVYIHSLRRKLGAEQIKNIRGVGYLVPR 218


>A1TU69.1 A1TU69_ACIAC Two component transcriptional regulator, winged helix
           family
          Length = 219

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 43/50 (86%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEKLY W D + SNA+EV+IH LRKKLG+D + NVRG+GY+VPK
Sbjct: 169 LSRAQLEEKLYSWKDEISSNAVEVYIHGLRKKLGADLVLNVRGVGYMVPK 218