BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0044.p         (195 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVQ5.1 D8IVQ5_HERSS Transmembrane sensor histidine kinase prot...   226   2e-57
F1VUQ6.1 F1VUQ6_9BURK Sensory histidine kinase QseC                   154   8e-36
B1F9L9.1 B1F9L9_9BURK Integral membrane sensor signal transducti...   144   6e-33
B1YVV3.1 B1YVV3_BURA4 Integral membrane sensor signal transducti...   144   7e-33
B1TCM9.1 B1TCM9_9BURK Integral membrane sensor signal transducti...   144   7e-33

>D8IVQ5.1 D8IVQ5_HERSS Transmembrane sensor histidine kinase protein
           EC=2.7.-.-
          Length = 444

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/151 (76%), Positives = 132/151 (87%)

Query: 12  ILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLDDEIMMQIWDST 71
           I+LAG+ALYFQARGEAN+IFDYQMRQIAASLPRQAF+PI+PGQ  P L+DEIMMQIWDS 
Sbjct: 20  IVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISPGQQFPELEDEIMMQIWDSR 79

Query: 72  GTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQSARKQVAAQAA 131
           G VIYHSH+R  MP+QAELGFA+V GP GMWRVYSAQIG+TV QV+QPQSAR ++AAQ A
Sbjct: 80  GAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGSTVVQVAQPQSARDEIAAQMA 139

Query: 132 VKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162
           VKTV+PLLLLFP +G L W+AV   LAPV +
Sbjct: 140 VKTVVPLLLLFPLIGVLSWVAVSRGLAPVRK 170


>F1VUQ6.1 F1VUQ6_9BURK Sensory histidine kinase QseC
          Length = 448

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 11/189 (5%)

Query: 1   LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDA---- 56
           L+WLA GL+  I L  + L+ QAR EAN +FD+QM+Q+A++LP +  +   PG  A    
Sbjct: 13  LVWLAAGLAVVISLMALLLFRQARDEANHLFDFQMQQVASALPSRFLSLPEPGTGAVFDA 72

Query: 57  -PGLDDEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQ 115
            P     +++QIWD TG  +Y SH  + +PQ A LGFA+V   G  WRVYSAQ G TV Q
Sbjct: 73  APA----VVIQIWDPTGVRLYFSHDVADLPQLAVLGFANVALRGETWRVYSAQQGATVVQ 128

Query: 116 VSQPQSARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXRNWPSAPATTKSAA 175
           ++QP  AR  +AA++A+KT+ PLLLL PFLG LIW+AV   LAPV     +A    + A 
Sbjct: 129 IAQPLRARSDMAARSALKTIAPLLLLVPFLGGLIWLAVSRGLAPVL--GVAAQLAARDAG 186

Query: 176 RLSPICAMA 184
           +L+P+   A
Sbjct: 187 QLAPVSDAA 195


>B1F9L9.1 B1F9L9_9BURK Integral membrane sensor signal transduction histidine
           kinase
          Length = 445

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 2/162 (1%)

Query: 1   LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLD 60
           L+WL   + AG+ LAG  +Y QA  EANE+FDYQ+++IAA+LP + F+ +  G    G D
Sbjct: 9   LIWLLAIVVAGVGLAGWLIYRQALAEANELFDYQLQEIAAALPSEPFSQVF-GSRTNG-D 66

Query: 61  DEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQ 120
           + I++QIW+  G ++Y SH R+ +  +AELGF+      G WRVY A +G+ V Q++QP 
Sbjct: 67  EGIVIQIWNRNGVLMYFSHPRAPIAPRAELGFSTERTDRGEWRVYGAIVGDNVVQLAQPL 126

Query: 121 SARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162
           S R ++AA  A++T+ PL++L PFLGA +W+ VG  LAP+ R
Sbjct: 127 SVRNRLAANVALRTLWPLIVLLPFLGAAVWMIVGRGLAPLAR 168


>B1YVV3.1 B1YVV3_BURA4 Integral membrane sensor signal transduction histidine
           kinase
          Length = 445

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 2/162 (1%)

Query: 1   LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLD 60
           L+WL   + AG+ LAG  +Y QA  EANE+FDYQ+++IAA+LP + F+ +  G    G D
Sbjct: 9   LIWLLAIVVAGVGLAGWLIYRQALAEANELFDYQLQEIAAALPSEPFSQVF-GSRTNG-D 66

Query: 61  DEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQ 120
           + I++QIW+  G ++Y SH R+ +  +AELGF+      G WRVY A +G+ V Q++QP 
Sbjct: 67  EGIVIQIWNRNGVLMYFSHPRAPIAPRAELGFSTERTDRGEWRVYGAIVGDNVVQLAQPL 126

Query: 121 SARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162
           S R ++AA  A++T+ PL++L PFLGA +W+ VG  LAP+ R
Sbjct: 127 SVRNRLAANVALRTLWPLIVLLPFLGAAVWMIVGRGLAPLAR 168


>B1TCM9.1 B1TCM9_9BURK Integral membrane sensor signal transduction histidine
           kinase
          Length = 445

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 2/162 (1%)

Query: 1   LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLD 60
           L+WL   + AG+ LAG  +Y QA  EANE+FDYQ+++IAA+LP + F+ +  G    G D
Sbjct: 9   LIWLLAIVVAGVGLAGWLIYRQALAEANELFDYQLQEIAAALPSEPFSQVF-GSRTNG-D 66

Query: 61  DEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQ 120
           + I++QIW+  G ++Y SH R+ +  +AELGF+      G WRVY A +G+ V Q++QP 
Sbjct: 67  EGIVIQIWNRNGVLMYFSHPRAPIAPRAELGFSTERTDRGEWRVYGAIVGDNVVQLAQPL 126

Query: 121 SARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162
           S R ++AA  A++T+ PL++L PFLGA +W+ VG  LAP+ R
Sbjct: 127 SVRNRLAANVALRTLWPLIVLLPFLGAAVWMIVGRGLAPLAR 168