BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0043.p         (167 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVQ5.1 D8IVQ5_HERSS Transmembrane sensor histidine kinase prot...   150   7e-35
D5QTX9.1 D5QTX9_METTR Integral membrane sensor signal transducti...   142   2e-32
B3RD94.1 B3RD94_CUPTR Putative sensory histidine kinase in two-c...   142   2e-32
Q0JY30.1 Q0JY30_CUPNH Signal transduction histidine kinase EC=2....   140   5e-32
C7RRM2.1 C7RRM2_ACCPU Integral membrane sensor signal transducti...   133   9e-30

>D8IVQ5.1 D8IVQ5_HERSS Transmembrane sensor histidine kinase protein
           EC=2.7.-.-
          Length = 444

 Score =  150 bits (379), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/172 (52%), Positives = 106/172 (61%), Gaps = 10/172 (5%)

Query: 1   VHQLLTLARQEPGVQEMAPLELAPLLRSTVQDHAPLAEHKGIDLGMTTQVEGA----VNA 56
           VHQLLTLARQEP       ++L  LL S V D + +AEH GIDLG++ Q +      V  
Sbjct: 268 VHQLLTLARQEPDAMSFTQVDLRALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPLRVTG 327

Query: 57  NVDALRILFGNLLSNALQYSPADSTVDVAMR-SDGDALVVTVEDRGPGIPEQDLERVFDR 115
           N DALRILF NL+ NAL+Y+PA   VDV +  S      V V+D GPGI E +L RVFDR
Sbjct: 328 NADALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVFDR 387

Query: 116 FHRAANVPPSQP-----GSGLGLAIVRQIADLHGARVRLENTGTGLRVEVRF 162
           F+RA +           GSGLGLAIVRQIADLH   V L NTG GL+  V F
Sbjct: 388 FYRAQHSQEGSGSRAAFGSGLGLAIVRQIADLHRVPVELRNTGHGLQARVVF 439


>D5QTX9.1 D5QTX9_METTR Integral membrane sensor signal transduction histidine
           kinase
          Length = 437

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 6/166 (3%)

Query: 1   VHQLLTLARQEPGVQE--MAPLELAPLLRSTVQDHAPLAEHKGIDLGMTTQVEGAVNANV 58
           VHQLLTLAR +P   +    PL L  L  S V   AP+A  +G+DLG+       V  + 
Sbjct: 269 VHQLLTLARLDPEATQRRFVPLRLDALAESEVAGLAPVAADRGVDLGLEAAEPAVVMGDE 328

Query: 59  DALRILFGNLLSNALQYSPADSTVDVAMRSDGDALVVTVEDRGPGIPEQDLERVFDRFHR 118
            AL IL  NL+ NA++YSPA   VDV +R+ GD + + V D GPG+P ++ +RVFDRF+R
Sbjct: 329 AALAILLRNLIDNAIRYSPAGGRVDVEVRTGGDGIRLDVRDEGPGVPPEEKQRVFDRFYR 388

Query: 119 AANVPPSQPGSGLGLAIVRQIADLHGARVRLENT--GTGLRVEVRF 162
            A    ++PGSGLGLAIVR IAD HGA V+LE+   G GL V VR+
Sbjct: 389 GAAA--AEPGSGLGLAIVRSIADWHGADVQLEDNEGGRGLVVRVRW 432


>B3RD94.1 B3RD94_CUPTR Putative sensory histidine kinase in two-component
           regulatory system; signal peptide
          Length = 441

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 106/169 (62%), Gaps = 9/169 (5%)

Query: 1   VHQLLTLARQEPG--VQEMAPLELAPLLRSTVQDHAPLAEHKGIDLGMTTQVEGA---VN 55
           V QLLTLARQEPG  V    P+EL  L  + V D A  A  + IDLG+      A   V 
Sbjct: 273 VTQLLTLARQEPGAAVPPHEPVELHQLAAAVVADMAQAALDRDIDLGLDGSANAAPAVVR 332

Query: 56  ANVDALRILFGNLLSNALQYSPADSTVDVAMR--SDGDALVVTVEDRGPGIPEQDLERVF 113
            + DALRIL  NL+ NAL Y PA   +DVA+R  SDG ++ + V D GPGIP ++  RVF
Sbjct: 333 GDADALRILLTNLVDNALAYIPAGGRIDVAVRRGSDGRSVELVVSDNGPGIPAEERARVF 392

Query: 114 DRFHRAANVPPSQPGSGLGLAIVRQIADLHGARVRLENTGTGLRVEVRF 162
           DRF+R A+ P    GSGLGLAIV +IA  HGARV LE+ G GLRV V F
Sbjct: 393 DRFYRVADAPTG--GSGLGLAIVAEIAQSHGARVVLEDAGPGLRVRVVF 439


>Q0JY30.1 Q0JY30_CUPNH Signal transduction histidine kinase EC=2.7.3.-
          Length = 442

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 107/169 (63%), Gaps = 9/169 (5%)

Query: 1   VHQLLTLARQEPG--VQEMAPLELAPLLRSTVQDHAPLAEHKGIDLGMTTQVEGA---VN 55
           V QLLTLARQEPG  +    P+EL  L  S V D A  A  + IDLG+    + +   V 
Sbjct: 273 VTQLLTLARQEPGAAMPRHEPVELHQLAASVVADMAQAALDRNIDLGLDGSKDTSPVVVR 332

Query: 56  ANVDALRILFGNLLSNALQYSPADSTVDVAM--RSDGDALVVTVEDRGPGIPEQDLERVF 113
            +VDALRIL  NLL NAL Y PA S +DV +   +DG A+ + V D GPGIP ++  RVF
Sbjct: 333 GDVDALRILLTNLLDNALAYIPAGSRIDVLVGRSADGRAVELVVSDNGPGIPAEERARVF 392

Query: 114 DRFHRAANVPPSQPGSGLGLAIVRQIADLHGARVRLENTGTGLRVEVRF 162
           DRF+R A+ P    GSGLGLAIV +IA  HGARV LE+ G GLRV V F
Sbjct: 393 DRFYRVADAPTG--GSGLGLAIVAEIAQSHGARVVLEDAGPGLRVRVVF 439


>C7RRM2.1 C7RRM2_ACCPU Integral membrane sensor signal transduction histidine
           kinase
          Length = 438

 Score =  133 bits (334), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 102/166 (61%), Gaps = 6/166 (3%)

Query: 1   VHQLLTLARQEPGV--QEMAPLELAPLLRSTVQDHAPLAEHKGIDLGMTTQVEG-AVNAN 57
           V QLLTLARQEPG   + + P+ L  L+   V D  PLAE + IDLG+T       V+ +
Sbjct: 269 VQQLLTLARQEPGGGDRPLTPVNLDDLVAKVVADQLPLAEARQIDLGVTPAARALTVSGD 328

Query: 58  VDALRILFGNLLSNALQYSPADSTVDVAMRSDGDALVVTVEDRGPGIPEQDLERVFDRFH 117
            +AL IL  NL+ NA++Y+P    VDVA+  D     V V D GPGIP ++ ERVFDRF+
Sbjct: 329 AEALHILVSNLVGNAIRYTPPGGKVDVAVGDDALGTFVEVNDSGPGIPPEERERVFDRFY 388

Query: 118 RAANVPPSQPGSGLGLAIVRQIADLHGARVRLENTGT-GLRVEVRF 162
           R A     +PGSGLGLAIVR IA+ H A V L+     GLR  VRF
Sbjct: 389 RRAQT--DEPGSGLGLAIVRTIAERHRASVLLDAADLGGLRARVRF 432