BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0028.p         (130 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVP9.1 D8IVP9_HERSS Transmembrane protein                           175   2e-42
A6T416.1 A6T416_JANMA Uncharacterized conserved protein               137   4e-31
A4GAB6.1 A4GAB6_HERAR Putative uncharacterized protein                112   2e-23
F1W1A3.1 F1W1A3_9BURK Putative uncharacterized protein                109   1e-22

>D8IVP9.1 D8IVP9_HERSS Transmembrane protein
          Length = 135

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 106/132 (80%), Gaps = 3/132 (2%)

Query: 2   EHKNTQAEPA---NPGLTAGLLGIARNLLGLIINRIELASLELSEIGGNLVKFLVLFTLG 58
            HK  Q  PA   +PGLTAGLLG+A+NLLGLII+RIELASLE+SEIG NLV+F V+F L 
Sbjct: 4   PHKEGQGAPAPAAHPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLA 63

Query: 59  AIAVWFAIAFWAVLLVFLAWDSWGWKILIVLGAFFTAAAAAIGWYAFALLRNGKLALPAT 118
           A+ +WFAIAFW+VL+V LAWD+WGWKIL +LG  FT A   + WYA ++L  GKL+LP T
Sbjct: 64  AVGLWFAIAFWSVLIVMLAWDTWGWKILALLGMVFTVATVGLVWYARSVLLQGKLSLPQT 123

Query: 119 MAELRKDRDALL 130
           MAELRKDRDALL
Sbjct: 124 MAELRKDRDALL 135


>A6T416.1 A6T416_JANMA Uncharacterized conserved protein
          Length = 130

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 93/130 (71%)

Query: 1   MEHKNTQAEPANPGLTAGLLGIARNLLGLIINRIELASLELSEIGGNLVKFLVLFTLGAI 60
           ME +  ++    PGL +G + +A+N+ GL+++RIELA+LEL+E+  N +K + LF LGAI
Sbjct: 1   MEQQTPRSSDFRPGLVSGAVNLAKNMFGLLMSRIELAALELAEVRANALKLVALFVLGAI 60

Query: 61  AVWFAIAFWAVLLVFLAWDSWGWKILIVLGAFFTAAAAAIGWYAFALLRNGKLALPATMA 120
              FAI +W+ L+V+L+W + GWKIL++L   FTA A  I  Y  +LLR GKL++PATMA
Sbjct: 61  VALFAIGYWSALIVYLSWPTLGWKILLILAIIFTAVAVGILLYVQSLLREGKLSMPATMA 120

Query: 121 ELRKDRDALL 130
           ELR D DALL
Sbjct: 121 ELRNDHDALL 130


>A4GAB6.1 A4GAB6_HERAR Putative uncharacterized protein
          Length = 130

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 86/130 (66%)

Query: 1   MEHKNTQAEPANPGLTAGLLGIARNLLGLIINRIELASLELSEIGGNLVKFLVLFTLGAI 60
           ME  + + +   PGL  G+  +ARN  GL+++RIELA+LEL+E+  N +K  +LF LG +
Sbjct: 1   MEQPSARPQNDRPGLIGGVAELARNTFGLLMSRIELAALELAEVRANALKLALLFALGVV 60

Query: 61  AVWFAIAFWAVLLVFLAWDSWGWKILIVLGAFFTAAAAAIGWYAFALLRNGKLALPATMA 120
             +FAI +W VL+ +L+W   GWKIL++L   FT     I +Y  +L+  GKL++PATM 
Sbjct: 61  IAFFAIGYWTVLIAYLSWPVLGWKILLILALVFTVITGGIFYYLKSLIEQGKLSMPATME 120

Query: 121 ELRKDRDALL 130
           ELR D DALL
Sbjct: 121 ELRNDHDALL 130


>F1W1A3.1 F1W1A3_9BURK Putative uncharacterized protein
          Length = 101

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 76/101 (75%)

Query: 30  IINRIELASLELSEIGGNLVKFLVLFTLGAIAVWFAIAFWAVLLVFLAWDSWGWKILIVL 89
           ++NRIELAS+E++E+  NL K +++   G IA  FA+AFW  LLVFL+WD+ GWKIL+++
Sbjct: 1   MVNRIELASIEMAEVRANLFKLILVAAAGVIAACFALAFWTGLLVFLSWDALGWKILLIV 60

Query: 90  GAFFTAAAAAIGWYAFALLRNGKLALPATMAELRKDRDALL 130
            A FTA A  I  Y  ++L+ G L++PAT+AELR DRDALL
Sbjct: 61  AAGFTAIAVGILLYLRSMLKQGMLSMPATLAELRNDRDALL 101