BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0024.p         (127 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IVP6.1 D8IVP6_HERSS Cytochrome c family protein                     206   1e-51
F1W1A5.1 F1W1A5_9BURK Putative cytochrome c5                          169   9e-41
A4GAB4.1 A4GAB4_HERAR Putative cytochrome c                           134   5e-30
A9HY91.1 A9HY91_BORPD Strain DSM 12804, complete genome               132   2e-29
A6T414.1 A6T414_JANMA Cytochrome c family protein                     132   2e-29

>D8IVP6.1 D8IVP6_HERSS Cytochrome c family protein
          Length = 189

 Score =  206 bits (523), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 104/113 (92%)

Query: 1   MIAARIKPVASEGFTFRDANAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARI 60
           MIAARIKPV+ +GFTFRDAN PKQLLSGEEV+K+TCAACH AG+AGAPKVGD A+W+ARI
Sbjct: 57  MIAARIKPVSDDGFTFRDANGPKQLLSGEEVYKTTCAACHSAGVAGAPKVGDAASWQARI 116

Query: 61  GEGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKFKEPEVK 113
            +GYD L++HAINGL AMP KGGNPDLDDVEI RTVVYMANQSGAKFKEPEVK
Sbjct: 117 AQGYDTLVSHAINGLRAMPAKGGNPDLDDVEIQRTVVYMANQSGAKFKEPEVK 169


>F1W1A5.1 F1W1A5_9BURK Putative cytochrome c5
          Length = 289

 Score =  169 bits (429), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 91/110 (82%)

Query: 2   IAARIKPVASEGFTFRDANAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIG 61
           I+ARIKPVA EGFTF+D NA K L SGE V+K+ C ACH AG+AG+PK+GD AAW ARI 
Sbjct: 58  ISARIKPVADEGFTFKDVNAIKVLQSGEAVYKAACMACHAAGVAGSPKIGDTAAWSARIA 117

Query: 62  EGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKFKEPE 111
           +GYD L++HA+NG+  MP KGGNPDLD++E+AR V YMANQ+GA FKEP+
Sbjct: 118 QGYDTLVSHAVNGIRGMPAKGGNPDLDNIEVARAVAYMANQAGATFKEPD 167



 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 27  SGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIGEGYDKLLAHAINGLN----AMPPKG 82
           +G++++ S C ACH AGIAGAPK GD  AW  RI +G   L  HAI G       MP KG
Sbjct: 209 AGKKLYDSVCMACHTAGIAGAPKFGDKLAWAERIKQGPAVLHEHAIKGYQGKAGVMPAKG 268

Query: 83  GNPDLDDVEIARTVVYM 99
           G+   DD E+   V YM
Sbjct: 269 GSAASDD-EVKAAVDYM 284


>A4GAB4.1 A4GAB4_HERAR Putative cytochrome c
          Length = 181

 Score =  134 bits (337), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 84/111 (75%)

Query: 2   IAARIKPVASEGFTFRDANAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIG 61
           ++ARIKPVA EGFT +D NAPK L +GEEV+K  CAACH  G AGAPK GD  AW  RI 
Sbjct: 57  VSARIKPVADEGFTLKDVNAPKVLKTGEEVYKMACAACHATGAAGAPKFGDAGAWGPRIA 116

Query: 62  EGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKFKEPEV 112
           +GY+ L+ HAI G+ AMP KGGNPDLDDVE+ R VV +AN +G KF EP+V
Sbjct: 117 QGYETLVKHAIQGIRAMPAKGGNPDLDDVEVERVVVLLANSAGGKFAEPKV 167


>A9HY91.1 A9HY91_BORPD Strain DSM 12804, complete genome
          Length = 301

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 77/109 (70%), Gaps = 2/109 (1%)

Query: 2   IAARIKPVASEGFTFRDANAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIG 61
           +A RI PVA  GF   DANAPK   +GE+VF++ C ACH AG+AGAPKVGD AAW   I 
Sbjct: 61  VARRIAPVA--GFELVDANAPKVFKTGEQVFQAVCTACHTAGVAGAPKVGDKAAWAPFIK 118

Query: 62  EGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKFKEP 110
            G++ +L  A++G  AMP KGGNP L D E+AR VVYMANQSG  F EP
Sbjct: 119 SGFESMLNVALHGKGAMPAKGGNPALSDYEVARAVVYMANQSGGSFDEP 167



 Score = 80.9 bits (198), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%)

Query: 27  SGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIGEGYDKLLAHAINGLNAMPPKGGNPD 86
           +GE+++KSTC ACHG G+AGAPK GD AAW+  I  G D ++  A+ G  AMPPKGG  +
Sbjct: 224 AGEKLYKSTCFACHGTGVAGAPKFGDKAAWEPYIKTGIDAMVKVALTGKGAMPPKGGAAN 283

Query: 87  LDDVEIARTVVYMAN 101
             + +I   V YM N
Sbjct: 284 ASEEDIRAAVEYMVN 298


>A6T414.1 A6T414_JANMA Cytochrome c family protein
          Length = 187

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 80/106 (75%)

Query: 2   IAARIKPVASEGFTFRDANAPKQLLSGEEVFKSTCAACHGAGIAGAPKVGDPAAWKARIG 61
           +AARIKPVA  GFT +D NAPK L +G+EV+K  CAACH  G AGAPK+GD  AW ARI 
Sbjct: 58  VAARIKPVADAGFTLKDVNAPKVLKTGDEVYKMACAACHATGAAGAPKMGDAGAWSARIA 117

Query: 62  EGYDKLLAHAINGLNAMPPKGGNPDLDDVEIARTVVYMANQSGAKF 107
           +GY  L  HAI G+ AMP KGGNPDLDDVE+ R VV MAN +GAKF
Sbjct: 118 QGYSTLAKHAIEGIRAMPAKGGNPDLDDVEVERVVVLMANSAGAKF 163