BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0011.p (379 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8NKK7.1 D8NKK7_RALSO Putative outer membrane porin 442 e-122 A3RQ84.1 A3RQ84_RALSO Outer membrane porin protein 32 442 e-122 B5SEM6.1 B5SEM6_RALSO Porin protein 440 e-121 B2U720.1 B2U720_RALPJ Porin Gram-negative type 439 e-121 B5RXE1.1 B5RXE1_RALSO Porin protein 437 e-120 >D8NKK7.1 D8NKK7_RALSO Putative outer membrane porin Length = 376 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 18 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 77 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 78 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 136 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 137 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 196 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 197 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 250 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 251 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 309 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 +SD + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 310 YSDVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 369 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 370 VGMRTRF 376 >A3RQ84.1 A3RQ84_RALSO Outer membrane porin protein 32 Length = 437 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 79 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 138 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 139 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 197 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 198 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 257 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 258 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 311 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 312 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 370 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 ++D + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 371 YADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 430 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 431 VGMRTRF 437 >B5SEM6.1 B5SEM6_RALSO Porin protein Length = 376 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 225/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 18 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 77 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 78 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 136 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 137 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 196 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 197 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 250 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 251 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 309 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 ++D + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 310 YADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 369 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 370 VGMRTRF 376 >B2U720.1 B2U720_RALPJ Porin Gram-negative type Length = 375 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/358 (61%), Positives = 268/358 (74%), Gaps = 9/358 (2%) Query: 23 QSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGGTGAIFKLEA 82 QS+VT+YGLID TIST NN NA GAR TG WFSG+R G GKEDLGGGT AIFKLE+ Sbjct: 26 QSNVTLYGLIDTTISTVNNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGGTSAIFKLES 85 Query: 83 EYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGDAYGSSKLGY 142 E+ TG MDTPGVLFNRD+WVGL ++E+ GK+T GRQN + RD S IYGD Y S K+G Sbjct: 86 EFETPTGNMDTPGVLFNRDAWVGL-SSESLGKLTFGRQNAIARDISGIYGDPYTSEKVGL 144 Query: 143 EEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEVAGAMNSGTT 202 +EGG+TN NNFKQLIFY+GSATGTR +NGVVWKK++ + GYQFGEV G GTT Sbjct: 145 DEGGYTNVNNFKQLIFYAGSATGTRMNNGVVWKKMWGGRFLTALGYQFGEVPGQFTQGTT 204 Query: 203 KAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLNAGYFHYTAE 262 ++ ALGYNG N+ ++GF +A N ++ ++YS+GG+ I + R+NAGYFHYT E Sbjct: 205 ESLALGYNGDNFHLAGFAQQAKVNGFMD------RSYSVGGNVIFGMFRVNAGYFHYTGE 258 Query: 263 Q-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNAFSDATNSTV 321 Q ALG R D+A+TVS K+ PQG DYE+GYQ+MKA NAA S+DG +TLNA+++ +T Sbjct: 259 QPAALGNRKDDAYTVSLKIAPQGAFDYEIGYQIMKAGNAAFSADG-NTLNAYANVAGATA 317 Query: 322 TGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELAVGMRTRF 379 GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VG NG +QTE AVGMRTRF Sbjct: 318 AGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGGTNGHNSQTEFAVGMRTRF 375 >B5RXE1.1 B5RXE1_RALSO Porin protein Length = 376 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 224/367 (61%), Positives = 274/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 18 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 77 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 78 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 136 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 137 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 196 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 197 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 250 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA ++DG +TLNA Sbjct: 251 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFNADG-NTLNA 309 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 ++D + +T GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 310 YADVSTATAAGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 369 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 370 VGMRTRF 376