BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0008.p         (225 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q1LDD6.1 Q1LDD6_RALME Two component transcriptional regulator, w...   284   6e-75
F0FY28.1 F0FY28_9BURK Winged helix family two component transcri...   284   6e-75
C5T7P8.1 C5T7P8_ACIDE Two component transcriptional regulator, w...   284   6e-75
A4JV01.1 A4JV01_BURVG Two component transcriptional regulator, w...   284   8e-75
B5WPI7.1 B5WPI7_9BURK Two component transcriptional regulator, w...   283   1e-74

>Q1LDD6.1 Q1LDD6_RALME Two component transcriptional regulator, winged helix
           family (Tn6048)
          Length = 221

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%)

Query: 1   LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60
           LVEDD MI  AI+ ALKDASYA D V DG+ A  ++  Q Y LVLLDLGLP  DG EVL 
Sbjct: 5   LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64

Query: 61  NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120
           +IR  + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL         ARMRAV
Sbjct: 65  SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115

Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179
           LRR GG+  P+L+NG + L PAT+E    +G  ++LS+REFSL+Q+LL+RPGAILSR +L
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223
           EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK
Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219


>F0FY28.1 F0FY28_9BURK Winged helix family two component transcriptional
           regulator
          Length = 221

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%)

Query: 1   LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60
           LVEDD MI  AI+ ALKDASYA D V DG+ A  ++  Q Y LVLLDLGLP  DG EVL 
Sbjct: 5   LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64

Query: 61  NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120
           +IR  + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL         ARMRAV
Sbjct: 65  SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115

Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179
           LRR GG+  P+L+NG + L PAT+E    +G  ++LS+REFSL+Q+LL+RPGAILSR +L
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223
           EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK
Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219


>C5T7P8.1 C5T7P8_ACIDE Two component transcriptional regulator, winged helix
           family
          Length = 221

 Score =  284 bits (727), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%)

Query: 1   LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60
           LVEDD MI  AI+ ALKDASYA D V DG+ A  ++  Q Y LVLLDLGLP  DG EVL 
Sbjct: 5   LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64

Query: 61  NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120
           +IR  + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL         ARMRAV
Sbjct: 65  SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115

Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179
           LRR GG+  P+L+NG + L PAT+E    +G  ++LS+REFSL+Q+LL+RPGAILSR +L
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223
           EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK
Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219


>A4JV01.1 A4JV01_BURVG Two component transcriptional regulator, winged helix
           family
          Length = 221

 Score =  284 bits (726), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%)

Query: 1   LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60
           LVEDD MI  AI+ ALKDASYA D V DG+ A  ++  Q Y LVLLDLGLP  DG EVL 
Sbjct: 5   LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64

Query: 61  NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120
           +IR  + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL         ARMRAV
Sbjct: 65  SIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115

Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179
           LRR GG+  P+L+NG + L PAT+E    +G  ++LS+REFSL+Q+LL+RPGAILSR +L
Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223
           EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK
Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219


>B5WPI7.1 B5WPI7_9BURK Two component transcriptional regulator, winged helix
           family
          Length = 221

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/225 (64%), Positives = 175/225 (77%), Gaps = 10/225 (4%)

Query: 1   LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60
           LVEDD MI  AI+ ALKDASYA D V DG+ A  ++  Q Y LVLLDL LP  DG EVL 
Sbjct: 5   LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGLEVLV 64

Query: 61  NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120
            IR  + P P++IITARD L+DR+RGLD GADDYV+KPF+M ELL         AR+RAV
Sbjct: 65  RIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELL---------ARIRAV 115

Query: 121 LRRNGGSGNPILTNGAIHLIPATREITFEGNT-LRLSSREFSLMQSLLLRPGAILSRQDL 179
           LRR GGS  P L+NG + L PAT+E +  G + L+LS+REFSL+Q+LL+RPGAILSR +L
Sbjct: 116 LRRKGGSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSEL 175

Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSKE 224
           EDRIYGW EEVESNAVEYLIH++R+KLG+++IKNVRG+GWMVSK+
Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSKD 220