BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0007.p (439 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2U744.1 B2U744_RALPJ Integral membrane sensor signal transducti... 380 e-103 C6BHW9.1 C6BHW9_RALP1 Histidine kinase 372 e-101 Q1LDD7.1 Q1LDD7_RALME Periplasmic sensor signal transduction his... 372 e-101 F0FY27.1 F0FY27_9BURK Periplasmic sensor signal transduction his... 372 e-101 C5T7P9.1 C5T7P9_ACIDE Histidine kinase 371 e-100 >B2U744.1 B2U744_RALPJ Integral membrane sensor signal transduction histidine kinase Length = 439 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/439 (46%), Positives = 285/439 (64%), Gaps = 13/439 (2%) Query: 1 LQAQLLFWVSLVIVVAALGGGYFSFQGAFAEAYEFQDDQLRQIAGLMEQQR-PAPGFVIT 59 +Q +L W+S++IV A+ G F+F AF EA+E QDD LRQ+ + + PAPG Sbjct: 11 VQQRLSVWLSVIIVAVAVLAGGFAFASAFREAHELQDDVLRQVGAMFDPGHLPAPGEAAD 70 Query: 60 EITEETADPESQVIVQVMGKHGSEISVRHNEKLSLPPNLPEGIQTFQSSHHAWRLFIRDL 119 + +D E++VIVQV+ G+ + + PP L +G+QT + +R++IR L Sbjct: 71 --APKVSDTEARVIVQVLPPAGAVPA-------ASPPVLTDGMQTARLGKRDYRVWIRTL 121 Query: 120 STGDRLVIGQRTEVRDEIAHGSGLRTVLPFLILMPVLLIVVNVLIRQMLKPVARLSSELD 179 + G R+ + Q T VRDE A S LRT++PFLIL+P+LL+ V ++R+M P+ RL+ E+D Sbjct: 122 ANGQRIAVAQETAVRDETARDSALRTLMPFLILVPILLLAVAHVLRKMFAPIKRLAHEVD 181 Query: 180 RRSEADLSAMDDEKVPAEIKPFTASINALLLRVEKSMEMQKRFVADAAHELRSPLTALSL 239 +R E L A+ E VP E++PF +IN LL RV++SM+ Q RFVADAAHELR+PL+ALSL Sbjct: 182 QRDERQLHAIAPEAVPDEVRPFVVAINRLLARVQQSMDAQHRFVADAAHELRTPLSALSL 241 Query: 240 QAENLAKIELPPAASERLATLRGGMQRMRTLLEQLLLMARAQATSRQVVSTVKMQDMFRE 299 QAE L + + P A RL TLR G++R R LLEQLL +ARAQ + TV +Q +FR Sbjct: 242 QAERLGQAAMSPDAQARLGTLRQGIERSRGLLEQLLTLARAQEATGVPTGTVSVQSVFRS 301 Query: 300 VLEDLMPMAEAKKLEVEVSSADDVYFHGHHFDCIVVIKNLVDNAIRYTPEYGRLILSAHK 359 VLEDLMP+A+AK+L++ V++ D H + D VV++NLVDNAIRYTPE GR+ LS Sbjct: 302 VLEDLMPLADAKQLDMGVTTEADARVHANELDLFVVVRNLVDNAIRYTPEGGRIDLSVAI 361 Query: 360 SDRRLIIDIEDSGPGISDDDVGRIFDPFYRVLGSGESGSGLGLAIVKAILDRSAAKATVT 419 + I ++D+GPGI D+ R+FDPFYRVLG+ +GSGLGL+IV ++ R + Sbjct: 362 DAEVVSIAVQDTGPGIPIDERARVFDPFYRVLGNEATGSGLGLSIVSTVVRRLGGE---V 418 Query: 420 NIRNEDGTKGGLRVRVTFP 438 ++ D GLRV V P Sbjct: 419 DLGEPDDRASGLRVTVRLP 437 >C6BHW9.1 C6BHW9_RALP1 Histidine kinase Length = 439 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/439 (45%), Positives = 281/439 (64%), Gaps = 13/439 (2%) Query: 1 LQAQLLFWVSLVIVVAALGGGYFSFQGAFAEAYEFQDDQLRQIAGLMEQQR-PAPGFVIT 59 +Q +L W+S++IV A+ G F+F AF EA+E QDD LRQ+ + + PAPG Sbjct: 11 VQRRLSVWLSVIIVAVAMLAGGFAFASAFREAHELQDDVLRQVGAMFDPGHLPAPGDPAD 70 Query: 60 EITEETADPESQVIVQVMGKHGSEISVRHNEKLSLPPNLPEGIQTFQSSHHAWRLFIRDL 119 + +D E++VIVQV+ G+ + P L +G+QT + +R+++R L Sbjct: 71 --APKVSDTEARVIVQVLPPAGAVPAANL-------PVLTDGMQTARLGKRDYRVWVRTL 121 Query: 120 STGDRLVIGQRTEVRDEIAHGSGLRTVLPFLILMPVLLIVVNVLIRQMLKPVARLSSELD 179 + G R+ + Q T VRDE A S LRT++PFLIL+P+LL+ V ++R+M P+ RL+ E+D Sbjct: 122 ANGQRIAVAQETAVRDETARDSALRTLMPFLILVPILLLAVAHVLRKMFAPIKRLAHEVD 181 Query: 180 RRSEADLSAMDDEKVPAEIKPFTASINALLLRVEKSMEMQKRFVADAAHELRSPLTALSL 239 +R E L A+ E VP E++PF +IN LL RV++SM+ Q RFVADAAHELR+PL+ALSL Sbjct: 182 QRDERQLHAIAPEAVPDEVRPFVVAINRLLARVQQSMDAQHRFVADAAHELRTPLSALSL 241 Query: 240 QAENLAKIELPPAASERLATLRGGMQRMRTLLEQLLLMARAQATSRQVVSTVKMQDMFRE 299 QAE L + + P A RL TLR G++R R LLEQLL +ARAQ + TV +Q +FR Sbjct: 242 QAERLGQAAMSPDAQARLGTLRQGIERSRGLLEQLLTLARAQEATGVPTGTVSVQSVFRS 301 Query: 300 VLEDLMPMAEAKKLEVEVSSADDVYFHGHHFDCIVVIKNLVDNAIRYTPEYGRLILSAHK 359 VLEDLMP+A+AK+L++ V++ D H D VV++NLVDNAIRYTPE GR+ LS Sbjct: 302 VLEDLMPLADAKQLDMGVTTEADARVHASELDLFVVVRNLVDNAIRYTPEGGRIDLSVAN 361 Query: 360 SDRRLIIDIEDSGPGISDDDVGRIFDPFYRVLGSGESGSGLGLAIVKAILDRSAAKATVT 419 + I ++D+GPGI ++ R+FDPFYRVLG+ +GSGLGL+IV ++ R + Sbjct: 362 DAHVVSIAVQDTGPGIPIEERARVFDPFYRVLGNEATGSGLGLSIVSTVVRRLGGE---V 418 Query: 420 NIRNEDGTKGGLRVRVTFP 438 + D GLRV V P Sbjct: 419 ELGEADDRASGLRVTVRLP 437 >Q1LDD7.1 Q1LDD7_RALME Periplasmic sensor signal transduction histidine kinase (Tn6048) Length = 443 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/439 (48%), Positives = 294/439 (66%), Gaps = 3/439 (0%) Query: 1 LQAQLLFWVSLVIVVAALGGGYFSFQGAFAEAYEFQDDQLRQIAGLMEQQRPAPGFVITE 60 +Q +L F +SL I+V A+ G FSF AF EA+E QDD LRQ+A LM++QR P T+ Sbjct: 5 VQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDRQRLLPAVPTTD 64 Query: 61 ITEETADPESQVIVQVMGK-HGSEISVRHNEKLSLPPNLPEGIQTFQSSHHAWRLFIRDL 119 I + D ES+VIVQ +G+ S + V L LP L +G+ T + +R+ ++ Sbjct: 65 IRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEVGGETFRVLVKTT 124 Query: 120 STGDRLVIGQRTEVRDEIAHGSGLRTVLPFLILMPVLLIVVNVLIRQMLKPVARLSSELD 179 ++G+R+ + Q + R+EIA LRTV+PFLIL+PVLL++V L+R+M +P+A LS E+D Sbjct: 125 ASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMFQPIAALSKEID 184 Query: 180 RRSEADLSAMDDEKVPAEIKPFTASINALLLRVEKSMEMQKRFVADAAHELRSPLTALSL 239 +R+E +L ++D +P E++PF +IN LL RV +SME Q+RFVADAAHELRSPLTA+SL Sbjct: 185 QRAEQELHPVEDRHLPVEVRPFVVAINRLLARVSQSMESQRRFVADAAHELRSPLTAMSL 244 Query: 240 QAENLAKIELPPAASERLATLRGGMQRMRTLLEQLLLMARAQATSRQVVSTVKMQDMFRE 299 QAE LA+ E+ A ERL LR G++R R+LL+QLL +A+AQ+ + S V +Q ++R Sbjct: 245 QAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPKSPVSVQSIYRR 304 Query: 300 VLEDLMPMAEAKKLEVEVSSADDVYFHGHHFDCIVVIKNLVDNAIRYTPEYGRLILSAHK 359 VLEDLMP+AEAK +++ V A D D I V+KNLVDNAIRYTPE GR+ LS Sbjct: 305 VLEDLMPLAEAKHIDIGVEGALDAEVWASELDMIAVVKNLVDNAIRYTPEGGRVDLSVGV 364 Query: 360 SDRRLIIDIEDSGPGISDDDVGRIFDPFYRVLGSGESGSGLGLAIVKAILDRSAAKATVT 419 S+ ++++ I+DSGPGI + R+FDPFYR LGS + GSGLGL+IV+ I +R A+ + Sbjct: 365 SEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTIANRIGAEIRLD 424 Query: 420 NIRNEDGTKGGLRVRVTFP 438 E T GL V V P Sbjct: 425 FSDQEKQT--GLNVAVIAP 441 >F0FY27.1 F0FY27_9BURK Periplasmic sensor signal transduction histidine kinase Length = 443 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/439 (48%), Positives = 294/439 (66%), Gaps = 3/439 (0%) Query: 1 LQAQLLFWVSLVIVVAALGGGYFSFQGAFAEAYEFQDDQLRQIAGLMEQQRPAPGFVITE 60 +Q +L F +SL I+V A+ G FSF AF EA+E QDD LRQ+A LM++QR P T+ Sbjct: 5 VQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDRQRLLPAVPTTD 64 Query: 61 ITEETADPESQVIVQVMGK-HGSEISVRHNEKLSLPPNLPEGIQTFQSSHHAWRLFIRDL 119 I + D ES+VIVQ +G+ S + V L LP L +G+ T + +R+ ++ Sbjct: 65 IRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEVGGETFRVLVKTT 124 Query: 120 STGDRLVIGQRTEVRDEIAHGSGLRTVLPFLILMPVLLIVVNVLIRQMLKPVARLSSELD 179 ++G+R+ + Q + R+EIA LRTV+PFLIL+PVLL++V L+R+M +P+A LS E+D Sbjct: 125 ASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMFQPIAALSKEID 184 Query: 180 RRSEADLSAMDDEKVPAEIKPFTASINALLLRVEKSMEMQKRFVADAAHELRSPLTALSL 239 +R+E +L ++D +P E++PF +IN LL RV +SME Q+RFVADAAHELRSPLTA+SL Sbjct: 185 QRAEQELHPVEDRHLPVEVRPFVVAINRLLARVSQSMESQRRFVADAAHELRSPLTAMSL 244 Query: 240 QAENLAKIELPPAASERLATLRGGMQRMRTLLEQLLLMARAQATSRQVVSTVKMQDMFRE 299 QAE LA+ E+ A ERL LR G++R R+LL+QLL +A+AQ+ + S V +Q ++R Sbjct: 245 QAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPKSPVSVQSIYRR 304 Query: 300 VLEDLMPMAEAKKLEVEVSSADDVYFHGHHFDCIVVIKNLVDNAIRYTPEYGRLILSAHK 359 VLEDLMP+AEAK +++ V A D D I V+KNLVDNAIRYTPE GR+ LS Sbjct: 305 VLEDLMPLAEAKHIDIGVEGALDAEVWASELDMIAVVKNLVDNAIRYTPEGGRVDLSVGV 364 Query: 360 SDRRLIIDIEDSGPGISDDDVGRIFDPFYRVLGSGESGSGLGLAIVKAILDRSAAKATVT 419 S+ ++++ I+DSGPGI + R+FDPFYR LGS + GSGLGL+IV+ I +R A+ + Sbjct: 365 SEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTIANRIGAEIRLD 424 Query: 420 NIRNEDGTKGGLRVRVTFP 438 E T GL V V P Sbjct: 425 FSDQEKQT--GLNVAVIAP 441 >C5T7P9.1 C5T7P9_ACIDE Histidine kinase Length = 450 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/439 (48%), Positives = 294/439 (66%), Gaps = 3/439 (0%) Query: 1 LQAQLLFWVSLVIVVAALGGGYFSFQGAFAEAYEFQDDQLRQIAGLMEQQRPAPGFVITE 60 +Q +L F +SL I+V A+ G FSF AF EA+E QDD LRQ+A LM++QR P T+ Sbjct: 12 VQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDRQRLLPAVPTTD 71 Query: 61 ITEETADPESQVIVQVMGK-HGSEISVRHNEKLSLPPNLPEGIQTFQSSHHAWRLFIRDL 119 I + D ES+VIVQ +G+ S + V L LP L +G+ T + +R+ ++ Sbjct: 72 IRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEFGGETFRVLVKTT 131 Query: 120 STGDRLVIGQRTEVRDEIAHGSGLRTVLPFLILMPVLLIVVNVLIRQMLKPVARLSSELD 179 ++G+R+ + Q + R+EIA LRTV+PFLIL+PVLL++V L+R+M +P+A LS E+D Sbjct: 132 ASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMFQPIAALSKEID 191 Query: 180 RRSEADLSAMDDEKVPAEIKPFTASINALLLRVEKSMEMQKRFVADAAHELRSPLTALSL 239 +R+E +L ++D +P E++PF +IN LL RV +SME Q+RFVADAAHELRSPLTA+SL Sbjct: 192 QRAEQELHPVEDRHLPVEVRPFAVAINRLLARVSQSMESQRRFVADAAHELRSPLTAMSL 251 Query: 240 QAENLAKIELPPAASERLATLRGGMQRMRTLLEQLLLMARAQATSRQVVSTVKMQDMFRE 299 QAE LA+ E+ A ERL LR G++R R+LL+QLL +A+AQ+ + S V +Q ++R Sbjct: 252 QAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPKSPVSVQSIYRR 311 Query: 300 VLEDLMPMAEAKKLEVEVSSADDVYFHGHHFDCIVVIKNLVDNAIRYTPEYGRLILSAHK 359 VLEDLMP+AEAK +++ V A D D I V+KNLVDNAIRYTPE GR+ LS Sbjct: 312 VLEDLMPLAEAKHIDIGVEGALDAEVWASELDMIAVVKNLVDNAIRYTPEGGRVDLSVGV 371 Query: 360 SDRRLIIDIEDSGPGISDDDVGRIFDPFYRVLGSGESGSGLGLAIVKAILDRSAAKATVT 419 S+ ++++ I+DSGPGI + R+FDPFYR LGS + GSGLGL+IV+ I +R A+ + Sbjct: 372 SEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTIANRIGAEIRLD 431 Query: 420 NIRNEDGTKGGLRVRVTFP 438 E T GL V V P Sbjct: 432 FSDQEKQT--GLNVAVIAP 448