BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0072.p (246 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J104.1 D8J104_HERSS LysR family transcription regulator protein 396 e-108 A1VQP1.1 A1VQP1_POLNA Transcriptional regulator, LysR family 331 6e-89 Q221U4.1 Q221U4_RHOFD Transcriptional regulator, LysR family 289 2e-76 E6UWN2.1 E6UWN2_VARPD Transcriptional regulator, LysR family 270 2e-70 B5WNT6.1 B5WNT6_9BURK Transcriptional regulator, LysR family 270 2e-70 >D8J104.1 D8J104_HERSS LysR family transcription regulator protein Length = 313 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/246 (76%), Positives = 216/246 (87%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MRPTIYGEAMIRH+RMALTSLSKAHEDIVALKSGLSGQVDVG ILSP ++L+P AIARVK Sbjct: 68 MRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 E +PMLRIGVEVESSNILL+RLL G+LDF++ RILD+E L YEEL+DEPICAVARVG Sbjct: 128 EQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVG 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HP H +++L D+ WIMAPKGSILR+R D MFR+ GL PP+NVVDTTAIL ITSLL Sbjct: 188 HPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDF+YAMPTEVARYY+QARLMD+LPIELPC+M GFGIITR++ LLSPGA ++ QAIR+ Sbjct: 248 QQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 Query: 241 VAKTIY 246 VAK IY Sbjct: 308 VAKMIY 313 >A1VQP1.1 A1VQP1_POLNA Transcriptional regulator, LysR family Length = 320 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 159/246 (64%), Positives = 197/246 (80%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 ++PT YGE MIRH+RMA+TSL++AH+DI ALKSGLSGQVDVGVI++P + L+P+AIA+VK Sbjct: 68 VQPTSYGETMIRHARMAITSLTQAHDDISALKSGLSGQVDVGVIMTPAMMLMPSAIAQVK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 SP+LRIGV++E+SN+LL RL G LDFL+ARIL++E LHYEEL EP+CAVARVG Sbjct: 128 SASPLLRIGVQLENSNVLLERLKNGMLDFLIARILEQEDKAKLHYEELVGEPVCAVARVG 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL + L+D+ WI++P+GSILR R D+MFR+ GL PP NVVDTTA+L ITSLL Sbjct: 188 HPLQSAAQLGLRDLAPLSWILSPQGSILRHRFDMMFRREGLEPPTNVVDTTALLVITSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDFL+ MP +VAR Y + + +LPI LPC+MD FGIITRR QLLSPGATIL QAIR Sbjct: 248 QQTDFLHVMPLDVARDYQRFGQLKILPILLPCEMDAFGIITRRHQLLSPGATILLQAIRQ 307 Query: 241 VAKTIY 246 A +Y Sbjct: 308 TAVRVY 313 >Q221U4.1 Q221U4_RHOFD Transcriptional regulator, LysR family Length = 328 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/246 (59%), Positives = 186/246 (75%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 +RPT+YGE MIRH RMALT+LS+ + I L++GLSGQVD+GVI++P +LVP AIAR K Sbjct: 83 VRPTLYGETMIRHVRMALTNLSQGQDSIATLQAGLSGQVDIGVIITPSTTLVPQAIARTK 142 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 + +P L IGVEV +SN L+ RL RG LDFL+ARI ++E +L YE+LS+E CAVARVG Sbjct: 143 QEAPRLCIGVEVGTSNELVERLKRGQLDFLIARIREQEDDLDLLYEDLSEETECAVARVG 202 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL ++ L D+ WI++P+GSILR R D+MFR+ L PANVV+ TAI ITSLL Sbjct: 203 HPLLARSDLGLNDLAAAGWILSPRGSILRHRFDMMFRRIELETPANVVEATAISVITSLL 262 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDFL+ MP EVARYY + + +LPIELPCKMD FG+I RR+QLLSPGA +L Q +R Sbjct: 263 QQTDFLHVMPLEVARYYVRCSELAILPIELPCKMDSFGVIARRDQLLSPGAKLLLQHLRT 322 Query: 241 VAKTIY 246 +A IY Sbjct: 323 IAAEIY 328 >E6UWN2.1 E6UWN2_VARPD Transcriptional regulator, LysR family Length = 319 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 179/246 (72%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MRPT YGE MIRH+R+AL SL++AH+++ ALK+G GQV VG I SPGL+L+P A+A VK Sbjct: 67 MRPTWYGETMIRHARVALASLNQAHDELTALKAGRFGQVSVGAITSPGLALLPPAVAMVK 126 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 P LR+ +E+E+S +L+ RL +G LD LVAR+ E L YE LS+EP+CA+ R G Sbjct: 127 REQPDLRVSLEIETSPVLIERLEQGKLDMLVARLFAEHDKSQLRYEALSEEPVCALVRPG 186 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL +TL+D+V WI+ P GS+LR R +LMF++ GL PP N ++++A+L IT +L Sbjct: 187 HPLLGESGLTLRDVVGAGWIVPPAGSVLRHRFELMFQEEGLAPPTNTIESSALLFITRML 246 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQ+D L + T+VARYY+ ++ LLP+++PC MD FGIITR ++LLSP A ++ +A++ Sbjct: 247 QQSDMLAVLATDVARYYAAHGIVSLLPLDMPCHMDQFGIITRTDRLLSPAARVMMKALKT 306 Query: 241 VAKTIY 246 + ++Y Sbjct: 307 ASMSVY 312 >B5WNT6.1 B5WNT6_9BURK Transcriptional regulator, LysR family Length = 325 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/248 (50%), Positives = 177/248 (71%), Gaps = 2/248 (0%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 M T+YGE MIRH+RM L++LS+AH++I AL++GL+GQV +GVI + ++VP AIA VK Sbjct: 68 MHATLYGEVMIRHARMVLSNLSQAHDEISALRAGLAGQVRIGVIAAAAATMVPRAIASVK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILD--EEVSHNLHYEELSDEPICAVAR 118 E P L+I EVE+S+++L RL GDLD ++ R+L+ + ++ YE L+DEP+C VAR Sbjct: 128 ERYPQLQIWTEVETSDVMLPRLAEGDLDIMIGRVLERQNQFKTDVRYEPLADEPLCVVAR 187 Query: 119 VGHPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITS 178 GHPL +TL+ IV+ W++ P GS+LR R DLMF + GL PP NVV+T L I+S Sbjct: 188 PGHPLENETGLTLRGIVNASWVLHPPGSVLRHRFDLMFSQIGLNPPQNVVNTNNFLAISS 247 Query: 179 LLQQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAI 238 LL Q+D L +P EVAR Y Q ++ +PI+LPC+MD FGIITR+ LLSP A ++ +A+ Sbjct: 248 LLLQSDMLAVLPDEVARQYQQYGVLKRVPIDLPCRMDTFGIITRQSHLLSPAAAVVLEAL 307 Query: 239 RDVAKTIY 246 RD A+ +Y Sbjct: 308 RDAAREVY 315