BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0070.p (369 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J105.1 D8J105_HERSS Outer membrane (Porin) protein 455 e-126 C6BDS5.1 C6BDS5_RALP1 Porin Gram-negative type 407 e-111 B2UCB7.1 B2UCB7_RALPJ Porin Gram-negative type 406 e-111 E2T4R8.1 E2T4R8_9RALS Outer membrane porin 405 e-111 C4I1W5.1 C4I1W5_BURPS Putative outer membrane porin 397 e-108 >D8J105.1 D8J105_HERSS Outer membrane (Porin) protein Length = 355 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 247/368 (67%), Positives = 285/368 (77%), Gaps = 31/368 (8%) Query: 20 FGACLASAQAE-DSVTIYGRVVAGIDVQSNVHQVNGN--TGTQVRAASNQWGTSMIGFKG 76 GA A AQA+ SVTIYGRVVAG+D+ +NV + +G+ TGT++RAASNQWGTSMIG KG Sbjct: 1 MGAFSAQAQAQTSSVTIYGRVVAGVDIMTNVPKTDGSGTTGTRIRAASNQWGTSMIGVKG 60 Query: 77 KEDLGGGLNSFFLLESGFGATTGKTNGPE-----LFNRRSYVGLNGS-AGSIKIGKNLFI 130 EDLGGG N+FFLLESGFG+TTG NG + LFNRRSYVGL+ + AGS+K+GKNLFI Sbjct: 61 TEDLGGGTNAFFLLESGFGSTTGGLNGTDINGTSLFNRRSYVGLSSANAGSLKLGKNLFI 120 Query: 131 DNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 190 +NDVWFLDPTGQQWIGTANLV+GRNW GASN+IEY TPT+GGF AT QTSLGE AGS +K Sbjct: 121 NNDVWFLDPTGQQWIGTANLVRGRNWPGASNVIEYTTPTFGGFGATVQTSLGEAAGSFSK 180 Query: 191 G-------RKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKE 243 G RKDG+SLVYQN GLELR IYD++RDANG+Y DV+DTSKE Sbjct: 181 GGTSTKYGRKDGLSLVYQNNGLELRGIYDVIRDANGRYT-------------DVYDTSKE 227 Query: 244 LILGGTYTIDKLKMYVGYENLKAPDV--AAGTPDTVNHYWVGANYQISPALTLIGSVFHV 301 LILGGTY IDKLKM++GYENL+APD A+G PD VNHYW+GANY ++P L+GSVFHV Sbjct: 228 LILGGTYKIDKLKMFLGYENLRAPDANTASGVPDRVNHYWLGANYDVTPQFQLVGSVFHV 287 Query: 302 NVNNNGGSANLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGG 361 N NN GSANL+M G NY LSKRTLLYVG GT+RN NA +SLEAD + G Q GG Sbjct: 288 NANNGNGSANLFMAGVNYFLSKRTLLYVGGGTMRNGNNANYSLEADSSTGGGKGTNQTGG 347 Query: 362 YVGIAHSF 369 Y GIAHSF Sbjct: 348 YFGIAHSF 355 >C6BDS5.1 C6BDS5_RALP1 Porin Gram-negative type Length = 358 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/359 (58%), Positives = 249/359 (69%), Gaps = 16/359 (4%) Query: 13 ALGTASLFGACLASAQAEDSVTIYGRVVAGIDVQSNVHQVNGNTGTQV-RAASNQWGTSM 71 ALG A A A+ SVT+YGRV +GID Q+NV G + RAA NQWGTSM Sbjct: 14 ALGLTFALAGWTAPALAQTSVTLYGRVASGIDYQNNVAPTATAPGGSLWRAADNQWGTSM 73 Query: 72 IGFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFI 130 GF GKEDLGGGL + F LESGFGA GKTNG LFNRRSYVGL+ G++ GKNLFI Sbjct: 74 FGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFI 133 Query: 131 DNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 190 NDVWFLDPTGQQ+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T Sbjct: 134 SNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTN 193 Query: 191 GRKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTY 250 R+DGVS VY LE+RAIYD++RD NGK+ D+F+ SKE GGTY Sbjct: 194 SRRDGVSAVYSAGPLEVRAIYDVIRDGNGKFS-------------DIFNFSKEATFGGTY 240 Query: 251 TIDKLKMYVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSA 310 TI K K++ YENL APD AAG P NHYW+G NY+++PALTLIG+ + VNVN+ GG+A Sbjct: 241 TIGKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNA 300 Query: 311 NLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 NL+M GANYNLSKRT+LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 301 NLFMAGANYNLSKRTMLYASVGTVQNSATANFSVEATNNNPA-PGKNQLGAYTGIVHSF 358 >B2UCB7.1 B2UCB7_RALPJ Porin Gram-negative type Length = 354 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 208/347 (59%), Positives = 248/347 (71%), Gaps = 16/347 (4%) Query: 25 ASAQAEDSVTIYGRVVAGIDVQSNVHQVNGNTGTQV-RAASNQWGTSMIGFKGKEDLGGG 83 A A A+ SVT+YGRV +GID Q+NV + G + RAA NQWGTSM GF GKEDLGGG Sbjct: 22 APALAQTSVTLYGRVASGIDYQNNVAPTATSPGGSLWRAADNQWGTSMFGFMGKEDLGGG 81 Query: 84 LNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFIDNDVWFLDPTGQ 142 L + F LESGFGA GKTNG LFNRRSYVGL+ G++ GKNLFI NDVWFLDPTGQ Sbjct: 82 LQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFISNDVWFLDPTGQ 141 Query: 143 QWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTKGRKDGVSLVYQN 202 Q+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T R+DGVS VY Sbjct: 142 QFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTNSRRDGVSAVYSA 201 Query: 203 QGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTYTIDKLKMYVGYE 262 LE+RAIYD++RD NGK+ D+F+ SKE +GGTYTI K K++ YE Sbjct: 202 GPLEVRAIYDVIRDGNGKFS-------------DIFNFSKEATVGGTYTIGKAKLFAVYE 248 Query: 263 NLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSANLYMVGANYNLS 322 NL APD AAG P NHYW+G NY+++PALTLIG+ + VNVN+ GG+ANL+M GANYNLS Sbjct: 249 NLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANLFMAGANYNLS 308 Query: 323 KRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 KRT+LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 309 KRTMLYASVGTVQNSATANFSVEATNNN-PAPGKNQLGAYTGIVHSF 354 >E2T4R8.1 E2T4R8_9RALS Outer membrane porin Length = 349 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/359 (58%), Positives = 248/359 (69%), Gaps = 16/359 (4%) Query: 13 ALGTASLFGACLASAQAEDSVTIYGRVVAGIDVQSNVHQ-VNGNTGTQVRAASNQWGTSM 71 ALG A A A+ SVT+YGRV +GID Q+NV G+ RAA NQWGTSM Sbjct: 5 ALGLTFALAGWTAPALAQTSVTLYGRVASGIDYQNNVAPTATAPGGSLWRAADNQWGTSM 64 Query: 72 IGFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFI 130 GF GKEDLGGGL + F LESGFGA GKTNG LFNRRSYVGL+ G++ GKNLFI Sbjct: 65 FGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFI 124 Query: 131 DNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 190 NDVWFLDPTGQQ+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T Sbjct: 125 SNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTN 184 Query: 191 GRKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTY 250 R+DGVS VY LE+RAIYD++RD NGK+ D+F+ SKE GGTY Sbjct: 185 SRRDGVSAVYSAGPLEVRAIYDVIRDGNGKFS-------------DIFNFSKEATFGGTY 231 Query: 251 TIDKLKMYVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSA 310 TI K K++ YENL APD AAG P NHYW+G NY+++PALTLIG+ + VNVN+ GG+A Sbjct: 232 TIGKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYEVTPALTLIGAAYRVNVNHGGGNA 291 Query: 311 NLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 NL+M GANYNLSKR +LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 292 NLFMAGANYNLSKRMMLYASVGTVQNSATANFSVEATNNN-PAPGKNQLGAYTGIVHSF 349 >C4I1W5.1 C4I1W5_BURPS Putative outer membrane porin Length = 347 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/361 (55%), Positives = 252/361 (69%), Gaps = 16/361 (4%) Query: 10 ILKALGTASLFGACLASAQAEDSVTIYGRVVAGIDVQSNVHQVNGNTGTQVRAASNQWGT 69 + K L SL +A A A++SVT+YGRVVAG+D Q+NV +G++G+ +RA NQWGT Sbjct: 2 VKKTLLMVSLLTFGMA-AHAQNSVTLYGRVVAGVDFQNNVQNADGSSGSLLRAGDNQWGT 60 Query: 70 SMIGFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNL 128 SM GF G EDLGGGL + F LESGFG++ G TNG LFNRRS+V L + G +K+G +L Sbjct: 61 SMFGFTGTEDLGGGLKALFKLESGFGSSAGATNGTALFNRRSFVALQSATWGQLKLGNDL 120 Query: 129 FIDNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGST 188 I + +W LDPTGQQ+IG+A LV+GRNW G +N+I Y+TP WGGF+ TSLG KAGS Sbjct: 121 AIADQIWALDPTGQQFIGSATLVRGRNWQGDNNMIAYETPNWGGFSGLVLTSLGGKAGSL 180 Query: 189 TKGRKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGG 248 RKD +SL Y + ELRAIYD+ RD NGKY D+F+ S+EL LGG Sbjct: 181 NSSRKDAISLTYTARTFELRAIYDVARDKNGKYS-------------DLFNASRELTLGG 227 Query: 249 TYTIDKLKMYVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGG 308 T T LK+Y YENL APD AG P NHYW+G NYQ++P LTLIG+ + VNVN+NGG Sbjct: 228 TATFSALKLYAAYENLSAPDSVAGAPTKANHYWLGVNYQLTPFLTLIGAAYRVNVNHNGG 287 Query: 309 SANLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHS 368 +ANL+M+GANY+LSK+TLLYV AGTVRN NA FS+EA P G+ Q G Y GI+HS Sbjct: 288 NANLFMLGANYSLSKQTLLYVSAGTVRNSPNANFSVEATNNNPAPGGK-QAGFYAGISHS 346 Query: 369 F 369 F Sbjct: 347 F 347