BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0059.p (364 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQD7.1 D8IQD7_HERSS Lipid A core-O-antigen ligase protein 389 e-106 D8IQD2.1 D8IQD2_HERSS Lipid A core-O-antigen ligase protein 221 2e-55 F2K181.1 F2K181_9GAMM O-antigen polymerase 177 2e-42 Q65W10.1 Q65W10_MANSM RfaL protein 171 2e-40 C6AQE6.1 C6AQE6_AGGAN RfaL protein 168 1e-39 >D8IQD7.1 D8IQD7_HERSS Lipid A core-O-antigen ligase protein Length = 402 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/361 (59%), Positives = 274/361 (75%), Gaps = 5/361 (1%) Query: 1 VSRDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPALLLLRAYPPSPALFW 60 ++R+D+LI+AV YF V+VAM LLH E KEYDLPLRF LA ALLLLRAYPP+PA FW Sbjct: 46 LNREDRLILAVLLAYFAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFW 105 Query: 61 SGLIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCLAGLGWAIQQK 120 SGLI+GGI AG++ GWQ Y +R+ G+TN IQYG+IS ++G+LCL G+ WA+QQ+ Sbjct: 106 SGLILGGIGAGVFAGWQ----YFAHNVRATGYTNAIQYGDISFIIGILCLTGITWAMQQR 161 Query: 121 SSVYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTAVV 180 ++ WV L+ G MG++GSLFTGSRGSWV LP CL IL Y + RYV G A+V Sbjct: 162 AARAWVALLIVGGVMGLMGSLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALV 221 Query: 181 VAIAVAYAI-PRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPLLG 239 AIA+ + + P T + R LA SE +Y++ ++ADSS+GTRMEMWR G MA E P+LG Sbjct: 222 AAIAIVFTVMPSTDFRARISLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLG 281 Query: 240 FGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRLFM 299 GKAG V+WE+ +I AG+I+ LM GNNHVYNEWLDA+ KRG+PGL+ LL LY +PLRLF+ Sbjct: 282 MGKAGFVQWETGQIEAGKINALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFI 341 Query: 300 QHAKTASRRAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGEEAK 359 K+A +AKPYA+GG++L+VNYI FGFSQVF+AHN+GVMTL F+ VILWG+LRGEE++ Sbjct: 342 ARLKSAPEQAKPYALGGVLLIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGMLRGEESR 401 Query: 360 E 360 Sbjct: 402 S 402 >D8IQD2.1 D8IQD2_HERSS Lipid A core-O-antigen ligase protein Length = 426 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 160/367 (43%), Positives = 230/367 (62%), Gaps = 15/367 (4%) Query: 3 RDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPALLLLRAYPPSPALFWSG 62 R+D LIM YF V+ +NL+H +EYD PLRFLLA+PALLLLRAYPP P W+G Sbjct: 67 REDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTG 126 Query: 63 LIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCLAGLGWAIQQKSS 122 IG + AGL + WQ L A R GG TNPIQYGNI++L+ +L GL AI+ + Sbjct: 127 AAIGAVGAGLLSLWQWL---ADGAARPGGSTNPIQYGNIAALLAILAACGLARAIRLQQP 183 Query: 123 VYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCL----WILYRAYGGEVSKRYVLG-GFT 177 + W + G +G+ S+ +GSRGSW+ LP C W+L RA G LG G Sbjct: 184 LRWKLMHAAGLILGLTASILSGSRGSWLALPVCATLAAWLLLRA--GYARLVLQLGAGSL 241 Query: 178 AVVVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPL 237 A++V +A+ +P++ + R LA++ET Y++ +ADSS+GTR+EMWR+G A + L Sbjct: 242 AMLVCLAL---LPQSPLSARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLL 298 Query: 238 LGFGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRL 297 +G+GK G++ + ++ G+ P ++ + H++NE+LDA+ KRG+PGL ALLVLY +PL L Sbjct: 299 VGWGKQGMIDAKHEMVSQGQASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWL 358 Query: 298 FMQHAKTAS-RRAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGE 356 F + + A+ A+ A G+M+V++Y+ FG +Q F+ HN GVM AF ILW L + E Sbjct: 359 FHRQRRLAAGYEARLAASAGVMMVLSYLAFGLTQAFLTHNNGVMLYAFLCSILWALCQ-E 417 Query: 357 EAKENAQ 363 +A A Sbjct: 418 QAVHPAN 424 >F2K181.1 F2K181_9GAMM O-antigen polymerase Length = 408 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/366 (31%), Positives = 183/366 (50%), Gaps = 9/366 (2%) Query: 1 VSRDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPAL-LLLRAYPPSPALF 59 +SR DKL+ AVF YFV+ + L G +E D P RFLL +P L L+L Y P AL Sbjct: 48 LSRQDKLLAAVFALYFVLMIVFIYLDGWHYRELDRPSRFLLVLPVLYLMLYCYGPRIAL- 106 Query: 60 WSGLIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCLAGLGWAIQQ 119 W G ++G A + ++ + + R+ G +PI +G+ S L+G+L + + Sbjct: 107 WVGSMLGAYGAVVVAVYERFVL---DLPRASGGEHPIMFGDTSMLLGVLSAMATLYFFSK 163 Query: 120 KSSVYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTAV 179 + +Y V FF G++GSL + SRG WVGLP + L + K+ V+G Sbjct: 164 RQFLY-VGLAALAFFSGVMGSLLSASRGGWVGLPLIMVFLLWQSRDLLGKKLVIGICLLG 222 Query: 180 VVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPLLG 239 V+ IP+ V R + A YL+ ++++S+G R EMW+ + P+ G Sbjct: 223 VMGAVTICNIPKLGVSNRIYEAAHNIEMYLQG-DSNTSVGLRFEMWKASVYMLADSPIFG 281 Query: 240 FGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRLFM 299 G+ +++ G I + +H +NE+LDA+ RGL G +AL+ +Y +PLRLF+ Sbjct: 282 VGEYSSKEFKQKLSDEGVITQITVEFDHAHNEYLDALGLRGLVGFLALMAVYLVPLRLFL 341 Query: 300 QHAKTASR--RAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGEE 357 + K YAIGG ++ ++Y+ F +Q +HN GVM F W R E Sbjct: 342 AKMREHQDNWNIKAYAIGGALIPMSYMDFALTQSMFSHNIGVMMYVFPIAFFWAATRWAE 401 Query: 358 AKENAQ 363 + + Sbjct: 402 KEAKGE 407 >Q65W10.1 Q65W10_MANSM RfaL protein Length = 419 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 109/366 (29%), Positives = 198/366 (54%), Gaps = 8/366 (2%) Query: 1 VSRDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPALLLLRAYPPSPALFW 60 +S D+K ++ + YF + V L+H +KE D P++ + + LLL +P + Sbjct: 55 ISPDEKWLIYSYGLYFSLFVLSLLIHQGRLKELDSPVKIVFLLTLLLLFSRFPIKFSTLI 114 Query: 61 SGLIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCL-AGLGWAIQQ 119 + +G ++AG+ T + F Y + + IQ G+I+ +GM L + + I+Q Sbjct: 115 YAIPMGSMIAGI-TALIDRF-YLHSQMAYAPRIMHIQGGDIAMSLGMFSLVCCIYFFIKQ 172 Query: 120 KSSVYWVIFLLCGFFMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTAV 179 + W++F L GMLGS+ + +RG W+G+PF L ++ AY +S+ + + + + Sbjct: 173 QKK--WMLFCLLATLSGMLGSILSTARGGWIGVPFVLCFIFWAYRKYLSRTFFVSVISIL 230 Query: 180 VVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRN-ADS-SLGTRMEMWRVGFMAATERPL 237 VVA+ VA +IP T + +R + A + SY+ + +DS S+G R EMW+ F+ E+P+ Sbjct: 231 VVAVGVAVSIPNTKIMKRINAAQHDITSYVDNKKGSDSTSVGARFEMWKSAFLMIKEKPV 290 Query: 238 LGFGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRL 297 G+G G+ + G I H +N++LD +KRG+ G IALL ++ +P+R Sbjct: 291 FGWGIEGVNQMRKEHQKQGIISKYASQFTHAHNQYLDDFSKRGVLGFIALLAVFLVPMRF 350 Query: 298 FMQHAKTASRRAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGEE 357 F ++ + K AI GM+ V++ + + FSQ F +HN+G + F ++ + ++ Sbjct: 351 FRKNL-SDRLEVKVVAIFGMVHVISVMFYCFSQGFFSHNSGNIFYFFPVILFYAVILNLT 409 Query: 358 AKENAQ 363 AK++A+ Sbjct: 410 AKKSAE 415 >C6AQE6.1 C6AQE6_AGGAN RfaL protein Length = 419 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 193/359 (53%), Gaps = 7/359 (1%) Query: 1 VSRDDKLIMAVFCFYFVVSVAMNLLHGEIVKEYDLPLRFLLAVPALLLLRAYPPSPALFW 60 +S++DK+++ + FYF V ++H ++E D P R LL +P LLLL PP Sbjct: 58 LSKEDKMLIYSYLFYFATFVLSFIIHQGKIRELDNPSRVLLFIPVLLLLLHIPPRLNTVL 117 Query: 61 SGLIIGGILAGLYTGWQNLFVYAGTMIRSGGHTNPIQYGNISSLVGMLCLAGLGWAIQQK 120 + +G I+AG+ + L +++ IQ G+I+ +GM +A +G+ QK Sbjct: 118 YAIPLGAIIAGITAIYDKLVLHSEMAFSV--RIMHIQGGDIAMSLGMFSVA-IGFYFFQK 174 Query: 121 SSVYWVIFLLCGF--FMGMLGSLFTGSRGSWVGLPFCLWILYRAYGGEVSKRYVLGGFTA 178 + + LC F G+LGS+ + +RG W+G+PF L ++ Y +SKR+ LG F+ Sbjct: 175 TQLKQTT--LCTFAGLCGILGSILSTARGGWIGVPFILILILWVYRQHLSKRFFLGLFSI 232 Query: 179 VVVAIAVAYAIPRTAVKERAHLAVSETLSYLKTRNADSSLGTRMEMWRVGFMAATERPLL 238 +++A +P + ER A + +YL+ + +S+GTR +MW+ + A E+P L Sbjct: 233 LIIAGFGINQLPNNRIAERVAAAEYDINAYLQRNDGSTSVGTRFDMWKSALLMAQEKPWL 292 Query: 239 GFGKAGLVKWESAEIAAGRIDPLMEGNNHVYNEWLDAIAKRGLPGLIALLVLYAIPLRLF 298 G+G G+ + + G I G NH +N++ D ++KRG+ GL+AL+ ++ +P LF Sbjct: 293 GWGVQGVSEKRKQQFEQGLISQFASGFNHAHNQYFDDLSKRGIVGLLALIGVFFVPFYLF 352 Query: 299 MQHAKTASRRAKPYAIGGMMLVVNYICFGFSQVFMAHNTGVMTLAFSTVILWGLLRGEE 357 ++ K+ K + G++ +++ + +G SQ F +HN+G + F ++ + + + Sbjct: 353 WRNLKSPHAEMKLAGLLGVVHILSVMFYGMSQGFFSHNSGNIFYFFLVIVFYAFTKQQR 411