BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0056.p (953 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQD3.1 D8IQD3_HERSS ABC-type multidrug transport system, ATPas... 804 0.0 A6SVC8.1 A6SVC8_JANMA ABC-type multidrug transport system, ATPas... 676 0.0 F1VXL9.1 F1VXL9_9BURK Lipid A export ATP-binding/permease protei... 668 0.0 A4G2D7.1 A4G2D7_HERAR Lipid A export ATP-binding/permease protei... 663 0.0 Q46Y65.1 Q46Y65_CUPPJ Glycosyl transferase, family 9 611 e-172 >D8IQD3.1 D8IQD3_HERSS ABC-type multidrug transport system, ATPase and permease components protein Length = 578 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/483 (87%), Positives = 455/483 (94%) Query: 1 LSHNMKRLAALHWPHKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 60 LS+NMKRLAALHWP+KKRLA+AF+AMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP Sbjct: 2 LSNNMKRLAALHWPYKKRLAVAFIAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 61 Query: 61 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPINFYATNTVGKVINSM 120 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLP++FYATNTVGKVINSM Sbjct: 62 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPLHFYATNTVGKVINSM 121 Query: 121 MFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWMLTIVTLVLLPLVSIVVRTTGKR 180 MFEVQQIIDMVTKVFTSI+RSALTVLGLLAWLLYLNW+LTIVTLVLLPLV++VVRTTGKR Sbjct: 122 MFEVQQIIDMVTKVFTSILRSALTVLGLLAWLLYLNWVLTIVTLVLLPLVTLVVRTTGKR 181 Query: 181 LKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHEYEKGRFHDRAENLRRYTMRMTTAF 240 LKKLNRDSLAVNAE+TQVIEETTRAQQVIK+FGG +YEK RF+ RAENLR YTMRMT AF Sbjct: 182 LKKLNRDSLAVNAEMTQVIEETTRAQQVIKIFGGQDYEKERFNRRAENLRSYTMRMTAAF 241 Query: 241 SATVPITQLMTACAVAVVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPL 300 S+TVPITQLMTA AVAVVIVMALIQSGNGQITVGGFVSF+TAMLMLL PLKQLAEINGPL Sbjct: 242 SSTVPITQLMTATAVAVVIVMALIQSGNGQITVGGFVSFITAMLMLLTPLKQLAEINGPL 301 Query: 301 QRGMAAAEEVYNLIDKTTERTGGETLSARSTGKLDLVDVEFSYPGHTQLALQKINLNVQP 360 QRGMAAAEEVY LIDKTTER GE L+ R+TG+LD V+V F+YPGH QLAL+ INL+V+ Sbjct: 302 QRGMAAAEEVYKLIDKTTERITGEALAGRATGQLDFVEVGFAYPGHEQLALKNINLHVEA 361 Query: 361 GETIAFVGMSGGGKSTLVSLIPGFYSATGGQILLDGKPIESISLTSLRSQIAMVSQNTVL 420 GETIAFVGMSGGGKSTLVSLIPGFYS + G+I LDG+ IE+ISL SLR QIAMV+QNTVL Sbjct: 362 GETIAFVGMSGGGKSTLVSLIPGFYSCSSGEIRLDGRDIETISLPSLRQQIAMVNQNTVL 421 Query: 421 FDDTLAANIAYGDAQPDPQRIRAAVVAAHLTDVVEGMPEGLETRIGDNGSRLSGGQRQRV 480 FDDTLAANIAYGDA PDP R+ AAV AAHLTDVV G+PEGL+TR+GDNGSRLSGGQRQRV Sbjct: 422 FDDTLAANIAYGDANPDPARVEAAVEAAHLTDVVAGLPEGLQTRLGDNGSRLSGGQRQRV 481 Query: 481 AIA 483 AIA Sbjct: 482 AIA 484 >A6SVC8.1 A6SVC8_JANMA ABC-type multidrug transport system, ATPase and permease components Length = 578 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/483 (68%), Positives = 406/483 (84%) Query: 1 LSHNMKRLAALHWPHKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 60 +S ++KRL + P+KKRLA+A L MI+TA TEP+ P + +VLLDKGF GKP+FSLWLVP Sbjct: 3 VSPHLKRLFGMLAPYKKRLAVALLGMIMTALTEPMFPAVMRVLLDKGFGGKPSFSLWLVP 62 Query: 61 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPINFYATNTVGKVINSM 120 VA++GIF +RGI+TFT++YMMTWVS+R+L LR+QMF RMLD+P+ FYAT++VG+VINSM Sbjct: 63 VAIVGIFVLRGISTFTTTYMMTWVSSRLLTTLRKQMFERMLDVPLGFYATHSVGRVINSM 122 Query: 121 MFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWMLTIVTLVLLPLVSIVVRTTGKR 180 MFEVQQII+M+TKV+TSI+R +LTV+ LL++L +LNW LT+V LVLLPL++IVVR TG+R Sbjct: 123 MFEVQQIIEMITKVYTSIIRDSLTVIVLLSFLFWLNWRLTLVALVLLPLIAIVVRATGRR 182 Query: 181 LKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHEYEKGRFHDRAENLRRYTMRMTTAF 240 L++L R+ VN E+TQVIEETTRA QVIK+FGGH YE+ RF RA+ LR YTMRM TA Sbjct: 183 LRRLTREYQTVNGEMTQVIEETTRANQVIKIFGGHRYEEERFEVRADKLRGYTMRMATAM 242 Query: 241 SATVPITQLMTACAVAVVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPL 300 +AT P+TQ+M + AVA+VIV+ALIQSG Q TVGGFVSF+TAMLMLL PLK +AE+NGPL Sbjct: 243 AATTPVTQVMASTAVAIVIVIALIQSGQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPL 302 Query: 301 QRGMAAAEEVYNLIDKTTERTGGETLSARSTGKLDLVDVEFSYPGHTQLALQKINLNVQP 360 QRG+ AAE V+ LID ERT G+ L+AR+ G+LD V + F+YPG +ALQ INL+VQP Sbjct: 303 QRGLTAAEAVFKLIDAEPERTNGKDLAARAAGRLDFVRLGFTYPGQQTMALQDINLSVQP 362 Query: 361 GETIAFVGMSGGGKSTLVSLIPGFYSATGGQILLDGKPIESISLTSLRSQIAMVSQNTVL 420 GETIAFVGMSGGGKSTLV+L+PGFYSAT G+I LDG IE ISL+SLR QIAMVSQ+ VL Sbjct: 363 GETIAFVGMSGGGKSTLVNLVPGFYSATAGEIQLDGVSIEEISLSSLRKQIAMVSQHVVL 422 Query: 421 FDDTLAANIAYGDAQPDPQRIRAAVVAAHLTDVVEGMPEGLETRIGDNGSRLSGGQRQRV 480 FDDT+AANIAYGDA PD RI AA AAHL +V+ G+PEGLET IGDNGSRLSGGQRQR+ Sbjct: 423 FDDTIAANIAYGDANPDRTRIMAAAHAAHLDEVIAGLPEGLETMIGDNGSRLSGGQRQRL 482 Query: 481 AIA 483 AIA Sbjct: 483 AIA 485 >F1VXL9.1 F1VXL9_9BURK Lipid A export ATP-binding/permease protein MsbA Length = 578 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/483 (66%), Positives = 395/483 (81%) Query: 1 LSHNMKRLAALHWPHKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 60 S ++ RLA + P + RL +AFL M +TA+TEP+ P + + LLD GFVGK LW VP Sbjct: 3 FSPHLMRLARMLKPFRGRLGLAFLGMAITASTEPMFPAVMKTLLDNGFVGKSTIPLWTVP 62 Query: 61 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPINFYATNTVGKVINSM 120 VAVIG+F +RG++TF ++YMMTWVST +LN LRRQMF+R+LD+P FY +VG+VINSM Sbjct: 63 VAVIGMFVLRGLSTFLTTYMMTWVSTHLLNILRRQMFSRLLDVPAQFYERTSVGRVINSM 122 Query: 121 MFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWMLTIVTLVLLPLVSIVVRTTGKR 180 MFEVQQII+MVTKVFTS++R +LTV+ LLA+LL+LNW LTIV LVLLPL++IVVR TGKR Sbjct: 123 MFEVQQIIEMVTKVFTSLIRDSLTVIVLLAFLLWLNWRLTIVALVLLPLMAIVVRMTGKR 182 Query: 181 LKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHEYEKGRFHDRAENLRRYTMRMTTAF 240 L+KL RD L VNAELTQVIEETTRAQQVIK+FGGH+YEK RF RA LR Y+MRM + F Sbjct: 183 LRKLTRDFLDVNAELTQVIEETTRAQQVIKIFGGHDYEKNRFEQRAIKLRNYSMRMASTF 242 Query: 241 SATVPITQLMTACAVAVVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPL 300 +ATVPITQ+M +CAV+VVIV+AL+QSG QIT GGFVSF+TAMLMLL PLK LAE+NGPL Sbjct: 243 AATVPITQIMASCAVSVVIVIALLQSGQNQITAGGFVSFITAMLMLLTPLKHLAEVNGPL 302 Query: 301 QRGMAAAEEVYNLIDKTTERTGGETLSARSTGKLDLVDVEFSYPGHTQLALQKINLNVQP 360 QRG+AAAE V+ LID ERT G L+ RS G ++ +V F+YP T AL INL + P Sbjct: 303 QRGIAAAEAVFALIDTPPERTNGVALTGRSVGHIEFQNVCFAYPEQTLPALANINLTIHP 362 Query: 361 GETIAFVGMSGGGKSTLVSLIPGFYSATGGQILLDGKPIESISLTSLRSQIAMVSQNTVL 420 GET+AFVG+SGGGKSTLV+L+PGF++ GQI LDG P++S+SLTSLRSQ+AMVSQN VL Sbjct: 363 GETVAFVGISGGGKSTLVNLVPGFHTPQSGQICLDGAPLDSLSLTSLRSQMAMVSQNVVL 422 Query: 421 FDDTLAANIAYGDAQPDPQRIRAAVVAAHLTDVVEGMPEGLETRIGDNGSRLSGGQRQRV 480 FDDT+AANIAYGD QPD +RI AA AAHLT+++ G+P+G ++ IGDNGSRLSGGQRQR+ Sbjct: 423 FDDTVAANIAYGDPQPDRERIEAAASAAHLTEMIMGLPKGFDSPIGDNGSRLSGGQRQRM 482 Query: 481 AIA 483 AIA Sbjct: 483 AIA 485 >A4G2D7.1 A4G2D7_HERAR Lipid A export ATP-binding/permease protein MsbA EC=3.6.3.- Length = 581 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/483 (67%), Positives = 406/483 (84%) Query: 1 LSHNMKRLAALHWPHKKRLAIAFLAMIVTAATEPVVPYIFQVLLDKGFVGKPAFSLWLVP 60 +S ++KRL + P+KKRLA+AF+ MI+TA TEP+ P + ++LLDKGF GKP FSLWLVP Sbjct: 3 ISPHLKRLYGMLGPYKKRLAVAFIGMIMTALTEPMFPAVMRLLLDKGFGGKPTFSLWLVP 62 Query: 61 VAVIGIFFIRGIATFTSSYMMTWVSTRILNELRRQMFARMLDLPINFYATNTVGKVINSM 120 +A+IGIF +RGI+TFT++Y MTWVS+R+L+ LR++MF R+LD+P+ FY T++VG+VINSM Sbjct: 63 LAIIGIFVLRGISTFTTTYTMTWVSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSM 122 Query: 121 MFEVQQIIDMVTKVFTSIVRSALTVLGLLAWLLYLNWMLTIVTLVLLPLVSIVVRTTGKR 180 MFEVQQII+M+TKV+TSI+R +LTV+ LLA+L +LNW LT+V LVLLPL++IVVR TGKR Sbjct: 123 MFEVQQIIEMITKVYTSIIRDSLTVIVLLAFLFWLNWRLTLVALVLLPLIAIVVRFTGKR 182 Query: 181 LKKLNRDSLAVNAELTQVIEETTRAQQVIKVFGGHEYEKGRFHDRAENLRRYTMRMTTAF 240 +++L R+ AVNAE+TQVIEE+TRA QVIK+FGGH+YE RF RA+ LR YTMRM + Sbjct: 183 VRRLTREYQAVNAEMTQVIEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTL 242 Query: 241 SATVPITQLMTACAVAVVIVMALIQSGNGQITVGGFVSFLTAMLMLLAPLKQLAEINGPL 300 +AT P+TQ+M +CAVA+VIV+ALIQS Q TVGGFVSF+TAMLMLLAPLK +AE+NGPL Sbjct: 243 AATTPVTQIMASCAVAIVIVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPL 302 Query: 301 QRGMAAAEEVYNLIDKTTERTGGETLSARSTGKLDLVDVEFSYPGHTQLALQKINLNVQP 360 Q+G+ AAE V+ LID ERT G+TL AR+ GKLD +++ FSYPGH +AL+ INL+V P Sbjct: 303 QKGLTAAEAVFGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLP 362 Query: 361 GETIAFVGMSGGGKSTLVSLIPGFYSATGGQILLDGKPIESISLTSLRSQIAMVSQNTVL 420 GETIAFVGMSGGGKSTLV+L+PGFY AT G+I LD PIE I+LTSLR QIAMVSQ+ VL Sbjct: 363 GETIAFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVL 422 Query: 421 FDDTLAANIAYGDAQPDPQRIRAAVVAAHLTDVVEGMPEGLETRIGDNGSRLSGGQRQRV 480 FDDT+AANIAYGD PD RI AA AAHL DV+ G+P+GLET IGDNGSRLSGGQRQR+ Sbjct: 423 FDDTIAANIAYGDETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRL 482 Query: 481 AIA 483 AIA Sbjct: 483 AIA 485 >Q46Y65.1 Q46Y65_CUPPJ Glycosyl transferase, family 9 Length = 376 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 290/371 (78%), Positives = 318/371 (85%), Gaps = 3/371 (0%) Query: 583 TMPQTLIPPALLKKSDKILFIAHLALGDFTYLQNFFQAFARANPHLKVHLWVDEVRRTSD 642 T PQTLIP LLK+S KILFIAHLALGDFTYLQNFF+AFA+ANPHL++HLWVDEVRRT D Sbjct: 9 TQPQTLIPADLLKRSKKILFIAHLALGDFTYLQNFFKAFAQANPHLEIHLWVDEVRRTGD 68 Query: 643 PAQWKHLEKYSLYDWVAACPFFDKIYTRTYSPALYQESIEEAQREHYPIVVSLATLRPHL 702 W+HL KYSLYDW+AACPFF K+YTRTYSP LY+ SI EAQ+EHYPIVVSLATLRP Sbjct: 69 AKAWEHLRKYSLYDWLAACPFFSKVYTRTYSPELYEASIREAQQEHYPIVVSLATLRPPQ 128 Query: 703 YAGLARSISPDGLVIGMKKRVKFYQPHHQLAYRKLNASIPPYSVDRANPQHISDVYAHWF 762 YA LAR+ISPDG V+GM + V+FYQPHH LAYRKL+ASIPPY VDRA+PQHISDVYAHWF Sbjct: 129 YANLARTISPDGFVVGMTRPVRFYQPHHLLAYRKLDASIPPYKVDRASPQHISDVYAHWF 188 Query: 763 NQLSGLEVATAERFPFVDIPQQWRDYAQEKLTSWGFKTADGNTGKLVFINPYAKTKKRCW 822 Q+SGLEV+ AERFPFVDIP QW+ YAQ+ L +WGF + GKLVFINPYAKTKKRCW Sbjct: 189 RQISGLEVSPAERFPFVDIPAQWQQYAQDTLAAWGFLPRE---GKLVFINPYAKTKKRCW 245 Query: 823 PLEHVAELIIAMKKLEAWRDSSFIVNAVPQELEHARAVISGYQLEHTELFSAEENFFQLP 882 LE VA LI AM++ WRDS FIVNAVPQEL HAR VIS Y L TELFSAE+NFFQLP Sbjct: 246 TLEQVAALIQAMQQHPRWRDSCFIVNAVPQELAHAREVISSYSLARTELFSAEDNFFQLP 305 Query: 883 AILERCDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPIDRANSTVITAPNRRDWVKA 942 AIL +CDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPIDR NSTVITA NRRDWV A Sbjct: 306 AILAQCDLIISVETAVMHLANAVHVPVIALMRQKNPEWVPIDRQNSTVITAANRRDWVNA 365 Query: 943 VTVEQVLKAIQ 953 + VEQV+K IQ Sbjct: 366 IPVEQVMKTIQ 376