BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0050.p         (190 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B2T4L2.1 B2T4L2_BURPP Uracil-DNA glycosylase superfamily              214   4e-54
B2JLC6.1 B2JLC6_BURP8 Uracil-DNA glycosylase superfamily              203   8e-51
B0T757.1 B0T757_CAUSK Uracil-DNA glycosylase superfamily              199   1e-49
D6UU29.1 D6UU29_9BACT Uracil-DNA glycosylase superfamily              195   2e-48
E8V174.1 E8V174_TERSS Uracil-DNA glycosylase superfamily              194   5e-48

>B2T4L2.1 B2T4L2_BURPP Uracil-DNA glycosylase superfamily
          Length = 188

 Score =  214 bits (545), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 129/185 (69%), Gaps = 8/185 (4%)

Query: 1   MMPSVT---VTSPLPDLLAPGLDVVFCGINPGMRAAASGHHFMGRSNRFWKTVHLSGFTP 57
           + PSVT   +   LPDLL PGL VVFCGINPG++AA++G HF GR NRFW+ +HLSGFTP
Sbjct: 4   LTPSVTRADLLQSLPDLLEPGLSVVFCGINPGVQAASTGGHFAGRGNRFWRAIHLSGFTP 63

Query: 58  ELIDPLDDCRILDHRCGLTTVVERPTARRXGARADELLRDEFIRSAETLRKKMEQLKPKC 117
           E I+P DD  +L + CGLTTVV RPT     ARAD+L   EF  +A    +K+E   P+C
Sbjct: 64  EQIEPNDDYTLLQYGCGLTTVVSRPT-----ARADQLSSWEFRAAAAGFERKIEGYAPQC 118

Query: 118 LAFLGKPAYQAIAGQPKVDWGKQPEKFGGAMVWLLPNPSGLNRGFSQDMLVQAYRELREE 177
           +AFLGK A  A++G   ++WG QP  FGGA  W+LPNPSGLNR FS D LV AYRELR  
Sbjct: 119 VAFLGKMALSAMSGSRDIEWGPQPATFGGARAWVLPNPSGLNRSFSLDALVTAYRELRLA 178

Query: 178 LAKTG 182
           +A  G
Sbjct: 179 VAPAG 183


>B2JLC6.1 B2JLC6_BURP8 Uracil-DNA glycosylase superfamily
          Length = 179

 Score =  203 bits (517), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 121/174 (69%), Gaps = 5/174 (2%)

Query: 2   MPSVTVTSPLPDLLAPGLDVVFCGINPGMRAAASGHHFMGRSNRFWKTVHLSGFTPELID 61
           MP     + LPD+LAPGL VVFCGINPG+ AAA+GHHF GR NRFW+T++L+GFTPEL+ 
Sbjct: 1   MPRADTPNHLPDILAPGLSVVFCGINPGLCAAATGHHFAGRGNRFWRTLYLAGFTPELLR 60

Query: 62  PLDDCRILDHRCGLTTVVERPTARRXGARADELLRDEFIRSAETLRKKMEQLKPKCLAFL 121
             DD  +L H CG T  V RPT     ARA  L R E   +A    +K+ Q  P+ +AFL
Sbjct: 61  AEDDRSLLLHACGSTAAVARPT-----ARAQHLSRAEIRTAAPEFERKIAQYAPRYIAFL 115

Query: 122 GKPAYQAIAGQPKVDWGKQPEKFGGAMVWLLPNPSGLNRGFSQDMLVQAYRELR 175
           GK A   + G+ +++WG QP+ FGGA +W+LPNPSGLNR FSQD LV AYRELR
Sbjct: 116 GKMAASELIGKREIEWGPQPQTFGGARIWVLPNPSGLNRAFSQDALVSAYRELR 169


>B0T757.1 B0T757_CAUSK Uracil-DNA glycosylase superfamily
          Length = 186

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 5/166 (3%)

Query: 10  PLPDLLAPGLDVVFCGINPGMRAAASGHHFMGRSNRFWKTVHLSGFTPELIDPLDDCRIL 69
           PLPD++ PGL V+FCG+NPG+ AAA+GHHF+GRSNRFW+ +HL+GFTP+ I P  D  +L
Sbjct: 4   PLPDIVGPGLSVIFCGLNPGLSAAAAGHHFVGRSNRFWRVLHLAGFTPDQIAPEQDASLL 63

Query: 70  DHRCGLTTVVERPTARRXGARADELLRDEFIRSAETLRKKMEQLKPKCLAFLGKPAYQAI 129
            +  GLT+VVERPT     A  D+L R EF+ +AE   + + +  P+C+AFLGK AY A+
Sbjct: 64  AYGLGLTSVVERPT-----AGVDDLARAEFVAAAEGFERWVRRHDPRCIAFLGKAAYAAM 118

Query: 130 AGQPKVDWGKQPEKFGGAMVWLLPNPSGLNRGFSQDMLVQAYRELR 175
            G+  V WG+Q + FGGA+ W+LPNPSG N  FS D LV AYRELR
Sbjct: 119 MGRQAVPWGRQADPFGGAVAWVLPNPSGRNLAFSLDALVIAYRELR 164


>D6UU29.1 D6UU29_9BACT Uracil-DNA glycosylase superfamily
          Length = 187

 Score =  195 bits (496), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/175 (54%), Positives = 123/175 (70%), Gaps = 5/175 (2%)

Query: 2   MPSVTVTSPLPDLLAPGLDVVFCGINPGMRAAASGHHFMGRSNRFWKTVHLSGFTPELID 61
           +P+      LPD+LA GL VVFCGINPG+R+A  G+HF GRSNRFW+ +HLSGFTPE I 
Sbjct: 14  LPAENPIQGLPDILANGLSVVFCGINPGLRSAVLGYHFAGRSNRFWRVLHLSGFTPEQIL 73

Query: 62  PLDDCRILDHRCGLTTVVERPTARRXGARADELLRDEFIRSAETLRKKMEQLKPKCLAFL 121
           P +   +LD+RCGLT+ VERPT       A++L R +FI     L +K+ Q  P+ +AFL
Sbjct: 74  PENARSLLDYRCGLTSAVERPT-----VGANDLRRIDFIEGRPELERKIRQYGPRYIAFL 128

Query: 122 GKPAYQAIAGQPKVDWGKQPEKFGGAMVWLLPNPSGLNRGFSQDMLVQAYRELRE 176
           GKPA  AI  Q ++ WG+Q  +FGGA VW+LPNPSGL+R F+ + LV AYREL E
Sbjct: 129 GKPACSAIFNQRELPWGQQSMRFGGAKVWVLPNPSGLSRAFTLENLVTAYRELVE 183


>E8V174.1 E8V174_TERSS Uracil-DNA glycosylase superfamily
          Length = 181

 Score =  194 bits (493), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 117/167 (70%), Gaps = 5/167 (2%)

Query: 9   SPLPDLLAPGLDVVFCGINPGMRAAASGHHFMGRSNRFWKTVHLSGFTPELIDPLDDCRI 68
           + L D+LA  LDV+FCGINP + AA +GHHF  RSNRFW+++HL+GFTP  I P DD  I
Sbjct: 14  TQLADMLAGNLDVLFCGINPALSAAHAGHHFSNRSNRFWRSLHLAGFTPHQIRPEDDHTI 73

Query: 69  LDHRCGLTTVVERPTARRXGARADELLRDEFIRSAETLRKKMEQLKPKCLAFLGKPAYQA 128
           L H CGLT  VERPT      +A +L   EF   A+ L +K+++  P+ LAFLGKPA+ A
Sbjct: 74  LHHGCGLTAAVERPT-----VKASDLALHEFRAGADGLERKVQRYHPRFLAFLGKPAFAA 128

Query: 129 IAGQPKVDWGKQPEKFGGAMVWLLPNPSGLNRGFSQDMLVQAYRELR 175
           I  +  V WG+Q  +FGGA VW+LPNPSGLNR F+ D LV AYREL+
Sbjct: 129 IFNKRSVAWGRQQVRFGGAEVWVLPNPSGLNRAFTLDALVSAYRELQ 175