BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0027.p (315 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8INT4.1 D8INT4_HERSS Preprotein translocase subunit SecF protein 565 e-159 A6SUU7.1 A6SUU7_JANMA Preprotein translocase SecF subunit 533 e-149 A4G1Z6.2 A4G1Z6_HERAR Protein-export membrane protein SecF 522 e-146 F1VY44.1 F1VY44_9BURK Protein-export membrane protein SecF 505 e-141 C3X616.1 C3X616_OXAFO Preprotein translocase subunit SecF 498 e-139 >D8INT4.1 D8INT4_HERSS Preprotein translocase subunit SecF protein Length = 314 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 275/314 (87%), Positives = 296/314 (94%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 MEFFRIKKDIPFMRHALIFN ISALTFV AVFFL S+GLHFSIEFTGGTVMEVAY K A+ Sbjct: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 +E IRKS+EGLG+ DT VQSFGTAQDVMIRLPAQ GVN++QQ+EKV +ALKA DPDV+LQ Sbjct: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQTEKVNAALKADDPDVRLQ 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVEFVGPQVGDELAHDGL+ALGMVV+GIVIYLAFRFEWKFAVAAVIANLHD++IILGFFA Sbjct: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAA+LAVLGYSVNESVVVFDRVREAFRDRR+GKLS PEVLNHAITST+SR Sbjct: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTMSR 240 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGSTEMMVL+M FGGPTLHYFA+ALTIGILFGIYSSVFVAAA+AMWLGVKREDLI Sbjct: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 Query: 302 KPAKPKDETDGAVV 315 KP K KDE GAVV Sbjct: 301 KPVKVKDENGGAVV 314 >A6SUU7.1 A6SUU7_JANMA Preprotein translocase SecF subunit Length = 314 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/314 (82%), Positives = 282/314 (89%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 MEFFRIKKDIPFMRHALIFNVISALTFV AVFFLL RGLH SIEFTGGTVMEV Y + A+ Sbjct: 1 MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHRGLHLSIEFTGGTVMEVTYSQPAD 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 IE +R + LG+ D QVQSFGTAQDV+IRLP Q +SAQ SE+VI ALKAQD V+L+ Sbjct: 61 IEGVRGKLTDLGYVDMQVQSFGTAQDVLIRLPVQKNADSAQISERVIGALKAQDSTVELK 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVEFVGPQVGDEL HDGLMALGM+VIGIVIYLAFRFEWK+AV+A++ANLHDVVIILGFFA Sbjct: 121 RVEFVGPQVGDELTHDGLMALGMLVIGIVIYLAFRFEWKYAVSAILANLHDVVIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRE FRDRR+GK+ EVLNHAIT TISR Sbjct: 181 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRETFRDRRFGKMPTEEVLNHAITQTISR 240 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGST++MVLSML FGGPTLHYFA+ALTIGI FGIYSSVFVAAA+AMWLGVKREDL+ Sbjct: 241 TVITHGSTQLMVLSMLFFGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLL 300 Query: 302 KPAKPKDETDGAVV 315 KP K KDE DGAVV Sbjct: 301 KPVKEKDEHDGAVV 314 >A4G1Z6.2 A4G1Z6_HERAR Protein-export membrane protein SecF Length = 315 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/315 (78%), Positives = 281/315 (89%) Query: 1 VMEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAA 60 +MEFFRIKKDIPFMRHALIFNVIS LTFV AVFFL+ +GLH SIEFTGGTVME+ YPK A Sbjct: 1 MMEFFRIKKDIPFMRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPA 60 Query: 61 NIENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQL 120 NIE +R + LG+TD QVQSFGTAQDV+IRLP Q VN+AQ SE+V++ALKAQD V L Sbjct: 61 NIEGVRTKLGELGYTDMQVQSFGTAQDVLIRLPVQQNVNTAQVSERVMTALKAQDETVSL 120 Query: 121 QRVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFF 180 +RVEFVGPQVG+EL HDGLMA+GM+VIG++IYLA RFEWK+AVAA+ ANLHDVVIILGFF Sbjct: 121 KRVEFVGPQVGEELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFF 180 Query: 181 AFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTIS 240 AFFQWEFSLTVLA +LAVLGYSVNESV+VFDRVRE FRDR++GK++ +V+NHAIT TIS Sbjct: 181 AFFQWEFSLTVLAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTIS 240 Query: 241 RTIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDL 300 RT+ITHGST++MVLSM GGPTLHYFA+ALTIGI FGIYSSVFVAAA+AMWLGVKREDL Sbjct: 241 RTLITHGSTQLMVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDL 300 Query: 301 IKPAKPKDETDGAVV 315 IKP K KDE DGAVV Sbjct: 301 IKPIKEKDEHDGAVV 315 >F1VY44.1 F1VY44_9BURK Protein-export membrane protein SecF Length = 312 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/314 (78%), Positives = 279/314 (88%), Gaps = 2/314 (0%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 ME FRIKK IPFMRHALIFN ISALTFVLAVFFL GLHFSIEF GGT++EV+Y AN Sbjct: 1 MELFRIKKTIPFMRHALIFNAISALTFVLAVFFLFHNGLHFSIEFKGGTLIEVSYKTPAN 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 IE +R++VE LG+TD QVQSFG A+DVMIRLP++ GVN+AQQS KV+ ALK +D DV+L+ Sbjct: 61 IEQVRQTVESLGYTDNQVQSFGKAEDVMIRLPSRPGVNTAQQSSKVLEALKLRDADVELR 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVE+VGPQVG ELA +GL AL MV++GI+IYLA RFEWK+AV+A+IANLHDV+IILGFFA Sbjct: 121 RVEYVGPQVGAELAQNGLTALAMVIVGIMIYLAIRFEWKYAVSAIIANLHDVIIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDR+RE FR +R K S EV++ AITSTISR Sbjct: 181 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRIRENFRTQR--KTSVVEVIDSAITSTISR 238 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGST+MMVLSML+FGGP+LHYFAVALTIGILFGIYSSVFVAAA+AMWLGVKREDLI Sbjct: 239 TVITHGSTQMMVLSMLLFGGPSLHYFAVALTIGILFGIYSSVFVAAAVAMWLGVKREDLI 298 Query: 302 KPAKPKDETDGAVV 315 KP K KDET GAVV Sbjct: 299 KPIKEKDETGGAVV 312 >C3X616.1 C3X616_OXAFO Preprotein translocase subunit SecF Length = 313 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/315 (76%), Positives = 277/315 (87%), Gaps = 3/315 (0%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 MEFFRIKKDIPFMRHALIFN+IS +TF+ AVFFL +GLH S+EFTGGTVMEV+Y AA+ Sbjct: 1 MEFFRIKKDIPFMRHALIFNIISLITFLAAVFFLWHKGLHLSVEFTGGTVMEVSYKNAAD 60 Query: 62 IENIRKSVEGLGF-TDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQL 120 ++ IR +V LGF D QVQ+FG AQDVMI LP Q + SAQQSEKV++AL AQ+PD +L Sbjct: 61 LDRIRNTVRDLGFGNDFQVQNFGRAQDVMINLPVQKDLTSAQQSEKVMTALLAQNPDARL 120 Query: 121 QRVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFF 180 QRVEFVGPQVGDEL HDGLMAL MVVIGI+IYLAFRFEWK+A++A+IANLHD+VIILGFF Sbjct: 121 QRVEFVGPQVGDELTHDGLMALAMVVIGIIIYLAFRFEWKYAISAIIANLHDIVIILGFF 180 Query: 181 AFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTIS 240 AFF+WEFSL+VLAAVLA+LGYSVNESV++FDR+RE FR R K S E++NHAITSTIS Sbjct: 181 AFFEWEFSLSVLAAVLAILGYSVNESVIIFDRIRENFRKMR--KASVMEIVNHAITSTIS 238 Query: 241 RTIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDL 300 RTIITHGST++MVLSMLIFGGPTLH FA+ALTIGI FGIYSSVFVAAA+AMWLG+KREDL Sbjct: 239 RTIITHGSTQLMVLSMLIFGGPTLHNFALALTIGICFGIYSSVFVAAAVAMWLGIKREDL 298 Query: 301 IKPAKPKDETDGAVV 315 +KP K + TDGAVV Sbjct: 299 VKPVKERGNTDGAVV 313