BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0001.p (435 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRT0.1 D8IRT0_HERSS ABC-type glycerol-3-phosphate transport sy... 794 0.0 C6BGU7.1 C6BGU7_RALP1 Extracellular solute-binding protein family 1 647 0.0 E2T2M5.1 E2T2M5_9RALS sn-glycerol-3-phosphate-binding periplasmi... 647 0.0 B2UA78.1 B2UA78_RALPJ Extracellular solute-binding protein family 1 646 0.0 D8NJY4.1 D8NJY4_RALSO Glycerol-3-phosphate-binding periplasmic p... 645 0.0 >D8IRT0.1 D8IRT0_HERSS ABC-type glycerol-3-phosphate transport system, periplasmic component protein Length = 437 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/431 (86%), Positives = 402/431 (93%) Query: 5 VKTFAAAALLATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGT 64 +KT A +LAT+T+SAFA T I WWHSMTGALGERVNA+AD+FNK+Q DYK+ PVYKGT Sbjct: 4 MKTLIATGVLATITSSAFAATAITWWHSMTGALGERVNALADDFNKTQGDYKIVPVYKGT 63 Query: 65 YDESMAAAIAAYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPA 124 YDESM+AAIAAYRAGNAP ILQ+FEVGTATM+Y+KGA+KPVYEVM QAGEKFDQNAYVPA Sbjct: 64 YDESMSAAIAAYRAGNAPAILQVFEVGTATMIYAKGAVKPVYEVMHQAGEKFDQNAYVPA 123 Query: 125 VSGYYSTAKGMMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGIT 184 V+GYYST KGMMSFPFNSSTTIMFYNKD+FAKAGLDP KPP TWQ+FVGMAAK+KASG Sbjct: 124 VAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGMAAKIKASGAA 183 Query: 185 CPYTTTWQSWVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGY 244 C YTTTWQSWVHLESFS WHN E ATK+NGFGGLDARLK+N PL VRHIEN+SNWAKQGY Sbjct: 184 CAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRHIENLSNWAKQGY 243 Query: 245 FIYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVI 304 F YAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVA LPYY+DVQGAPQNTVI Sbjct: 244 FTYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVATLPYYNDVQGAPQNTVI 303 Query: 305 GGASLWVMGGKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYER 364 GGASLWVM GKKADEYKGVAKFF+YLSKPEV AKWHQ+TGYLPVTKAAYE+T+ SGFYER Sbjct: 304 GGASLWVMNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTKAAYELTKSSGFYER 363 Query: 365 NPGTDVAVKQMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGD 424 NPGTDVAVKQMIVKTT+KSRG+RLGNYAQ+RTV DEELENVWTGKK+ K+ALDSAVKRGD Sbjct: 364 NPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKKSAKDALDSAVKRGD 423 Query: 425 ELLARFEKANK 435 ELLARFEKANK Sbjct: 424 ELLARFEKANK 434 >C6BGU7.1 C6BGU7_RALP1 Extracellular solute-binding protein family 1 Length = 438 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/422 (72%), Positives = 355/422 (84%), Gaps = 1/422 (0%) Query: 15 ATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGTYDESMAAAIA 74 T A+AVT+I WWHSM GAL ++VN +A +FN SQSDYK+ PVYKG YDES+AA IA Sbjct: 16 CTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIA 75 Query: 75 AYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPAVSGYYSTAKG 134 A+RAGNAP ILQ+FEVGTATM+ +KGAI PV ++M+ AGEKFD AYVPAV+GYY++ KG Sbjct: 76 AFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKG 135 Query: 135 -MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGITCPYTTTWQS 193 M+SFPFNSSTTIM+YNKD F KAGLDPNKPPATWQ+ AAK+KA+G+ C YTT WQS Sbjct: 136 EMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQS 195 Query: 194 WVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGYFIYAGRKDE 253 WVHLESFSAWHN AT++NGFGG ARL NGP+Q++HIEN+ + K+GYF YAGRKDE Sbjct: 196 WVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDE 255 Query: 254 ANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVIGGASLWVMG 313 AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT+IGGASLWVMG Sbjct: 256 PKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMG 315 Query: 314 GKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYERNPGTDVAVK 373 G KA+EYKGVAKFF++LS+PE+QA WHQ TGYLPVT AYE+T+KSGFYE+NPG DVAVK Sbjct: 316 GHKAEEYKGVAKFFSFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVK 375 Query: 374 QMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGDELLARFEKA 433 QMIVKTTDKSRGIRLGN+ QIR VIDEELE+VW GKKAPKEALD+AV RG+ELL RFEK Sbjct: 376 QMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKAPKEALDTAVSRGNELLVRFEKT 435 Query: 434 NK 435 K Sbjct: 436 VK 437 >E2T2M5.1 E2T2M5_9RALS sn-glycerol-3-phosphate-binding periplasmic protein UgpB Length = 438 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/422 (72%), Positives = 355/422 (84%), Gaps = 1/422 (0%) Query: 15 ATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGTYDESMAAAIA 74 T A+AVT+I WWHSM GAL ++VN +A +FN SQSDYK+ PVYKG YDES+AA IA Sbjct: 16 CTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIA 75 Query: 75 AYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPAVSGYYSTAKG 134 A+RAGNAP ILQ+FEVGTATM+ +KGAI PV ++M+ AGEKFD AYVPAV+GYY++ KG Sbjct: 76 AFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKG 135 Query: 135 -MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGITCPYTTTWQS 193 M+SFPFNSSTTIM+YNKD F KAGLDPNKPPATWQ+ AAK+KA+G+ C YTT WQS Sbjct: 136 EMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQS 195 Query: 194 WVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGYFIYAGRKDE 253 WVHLESFSAWHN AT++NGFGG ARL NGP+Q++HIEN+ + K+GYF YAGRKDE Sbjct: 196 WVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDE 255 Query: 254 ANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVIGGASLWVMG 313 AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT+IGGASLWVMG Sbjct: 256 PKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMG 315 Query: 314 GKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYERNPGTDVAVK 373 G KA+EYKGVAKFF++LS+PE+QA WHQ TGYLPVT AYE+T+KSGFYE+NPG DVAVK Sbjct: 316 GHKAEEYKGVAKFFSFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVK 375 Query: 374 QMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGDELLARFEKA 433 QMIVKTTDKSRGIRLGN+ QIR VIDEELE+VW GKKAPKEALD+AV RG+ELL RFEK Sbjct: 376 QMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKAPKEALDTAVSRGNELLVRFEKT 435 Query: 434 NK 435 K Sbjct: 436 VK 437 >B2UA78.1 B2UA78_RALPJ Extracellular solute-binding protein family 1 Length = 438 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/422 (72%), Positives = 354/422 (83%), Gaps = 1/422 (0%) Query: 15 ATMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKGTYDESMAAAIA 74 T A+AVT+I WWHSM GAL ++VN +A +FN SQSDYK+ PVYKG YDES+AA IA Sbjct: 16 CTFAQGAYAVTEIQWWHSMEGALNDKVNEIATKFNASQSDYKIVPVYKGQYDESLAAGIA 75 Query: 75 AYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVPAVSGYYSTAKG 134 A+RAGNAP ILQ+FEVGTATM+ +KGAI PV ++M+ AGEKFD AYVPAV+GYY++ KG Sbjct: 76 AFRAGNAPAILQVFEVGTATMMNAKGAIVPVAKIMKDAGEKFDPKAYVPAVAGYYTSNKG 135 Query: 135 -MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASGITCPYTTTWQS 193 M+SFPFNSSTTIM+YNKD F KAGLDPNKPPATWQ+ AAK+KA+G+ C YTT WQS Sbjct: 136 EMLSFPFNSSTTIMYYNKDAFKKAGLDPNKPPATWQEVAVDAAKLKAAGVPCGYTTDWQS 195 Query: 194 WVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQGYFIYAGRKDE 253 WVHLESFSAWHN AT++NGFGG ARL NGP+Q++HIEN+ + K+GYF YAGRKDE Sbjct: 196 WVHLESFSAWHNVSFATENNGFGGAKARLNFNGPVQIKHIENLLDMQKKGYFTYAGRKDE 255 Query: 254 ANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNTVIGGASLWVMG 313 AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT+IGGASLWVMG Sbjct: 256 PKAKFIAGECAMHTGSSAALANIRKNAKFNFSPAPLPYEAGVPGAPQNTIIGGASLWVMG 315 Query: 314 GKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFYERNPGTDVAVK 373 G KA+EYKGVAKFFT+LS+PE+QA WHQ TGYLPVT AYE+T+KSGFYE+NPG DVAVK Sbjct: 316 GHKAEEYKGVAKFFTFLSRPEMQADWHQSTGYLPVTLEAYELTKKSGFYEKNPGADVAVK 375 Query: 374 QMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKRGDELLARFEKA 433 QMIVKTTDKSRGIRLGN+ QIR VIDEELE+VW GKK PKEALD+AV RG+ELL RFEK Sbjct: 376 QMIVKTTDKSRGIRLGNFPQIRQVIDEELESVWAGKKTPKEALDTAVSRGNELLVRFEKT 435 Query: 434 NK 435 K Sbjct: 436 VK 437 >D8NJY4.1 D8NJY4_RALSO Glycerol-3-phosphate-binding periplasmic protein Length = 438 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/433 (71%), Positives = 362/433 (83%), Gaps = 3/433 (0%) Query: 6 KTFAAAALLA--TMTTSAFAVTDIAWWHSMTGALGERVNAMADEFNKSQSDYKVTPVYKG 63 K A A+LA T +A AVT+I WWHSM GAL E+VN +A++FN SQSDYKV PVYKG Sbjct: 5 KIAGAVAVLAACTFAQAAHAVTEIQWWHSMEGALNEKVNELANKFNASQSDYKVVPVYKG 64 Query: 64 TYDESMAAAIAAYRAGNAPNILQIFEVGTATMVYSKGAIKPVYEVMQQAGEKFDQNAYVP 123 YDES+AA IAA+RAGNAP ILQ+FEVGTATM+ ++GAI PV +VM+ AGEKFD AYVP Sbjct: 65 QYDESLAAGIAAFRAGNAPAILQVFEVGTATMMNARGAIVPVAKVMKDAGEKFDPKAYVP 124 Query: 124 AVSGYYSTAKG-MMSFPFNSSTTIMFYNKDLFAKAGLDPNKPPATWQDFVGMAAKMKASG 182 AV+GYY++ KG M+SFPFNSSTTI++YNKD F KAGLDPNKPPATWQ+ AAK+KA+G Sbjct: 125 AVAGYYTSNKGEMLSFPFNSSTTILYYNKDAFKKAGLDPNKPPATWQEVAIDAAKLKAAG 184 Query: 183 ITCPYTTTWQSWVHLESFSAWHNTETATKSNGFGGLDARLKINGPLQVRHIENMSNWAKQ 242 + C YTT WQSWVHLESFSAWHN AT++NGFGG ARL NGP+QV+HIE++ + K+ Sbjct: 185 VACGYTTDWQSWVHLESFSAWHNVLFATENNGFGGAKARLAFNGPVQVQHIEHLLDMEKK 244 Query: 243 GYFIYAGRKDEANAKFNAGECAIITGSSSAYADIRKNAKFKFGVAPLPYYSDVQGAPQNT 302 GYF YAGRKDE AKF AGECA+ TGSS+A A+IRKNAKF F APLPY + V GAPQNT Sbjct: 245 GYFTYAGRKDEPKAKFIAGECAMHTGSSAALANIRKNAKFSFSPAPLPYEAGVPGAPQNT 304 Query: 303 VIGGASLWVMGGKKADEYKGVAKFFTYLSKPEVQAKWHQETGYLPVTKAAYEITQKSGFY 362 +IGGASLWVMGG K +EYKGVA+FFT+LS+PE+QA WHQ TGYLPVT AYE+T+KSGFY Sbjct: 305 IIGGASLWVMGGHKPEEYKGVARFFTFLSRPEIQADWHQSTGYLPVTMEAYELTRKSGFY 364 Query: 363 ERNPGTDVAVKQMIVKTTDKSRGIRLGNYAQIRTVIDEELENVWTGKKAPKEALDSAVKR 422 ++NPG DVAVKQMIVKTTDKSRGIRLGN+ QIR+VIDEELE VW GKK+PKEALDSAV R Sbjct: 365 DKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWAGKKSPKEALDSAVAR 424 Query: 423 GDELLARFEKANK 435 G++LLARFEK K Sbjct: 425 GNDLLARFEKTVK 437