BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0752.p (251 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9TLW2.1 B9TLW2_RICCO HTH-type transcriptional regulator ptxR, p... 251 6e-65 B1J3Q3.1 B1J3Q3_PSEPW Transcriptional regulator, LysR family 226 3e-57 B1K7K5.1 B1K7K5_BURCC Transcriptional regulator, LysR family 223 2e-56 Q1I4J7.1 Q1I4J7_PSEE4 Putative transcriptional regulator, LysR f... 218 6e-55 B1T1Z9.1 B1T1Z9_9BURK Transcriptional regulator, LysR family 214 1e-53 >B9TLW2.1 B9TLW2_RICCO HTH-type transcriptional regulator ptxR, putative EC=4.2.1.1 (Fragment) Length = 241 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 122/187 (65%), Positives = 145/187 (77%), Gaps = 15/187 (8%) Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 VGQ YY+RC+ I+DQVEDA +V HH + P+G +LRINAPMVFGT+E+ Sbjct: 1 VGQAYYRRCVQILDQVEDATLMVQHHQSHPSG-----------LLRINAPMVFGTMELGK 49 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP FM+ YPELK+D+VCNDRFVDLI+EEFDVGLRITR+LPDSTL+AKRL+VS+M LVA Sbjct: 50 WLPDFMRRYPELKIDLVCNDRFVDLIAEEFDVGLRITRTLPDSTLMAKRLSVSDMVLVAA 109 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLS--GNVQANTGLI 238 P YL +HG P P DL QHN+LAYSLALQTTEL FT D R LVS+ GN+QANTG++ Sbjct: 110 PDYLRRHGIPSTPADLMQHNYLAYSLALQTTELTFT--DARGALVSVDVRGNLQANTGIV 167 Query: 239 VCAAARA 245 VC A RA Sbjct: 168 VCDAVRA 174 >B1J3Q3.1 B1J3Q3_PSEPW Transcriptional regulator, LysR family Length = 301 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL+AM+ FRRVV+ G FSAAA +SHT +SRQV QLE LG QLL RTTRR LTE Sbjct: 1 MDQLSAMQTFRRVVDLGSFSAAASQAGLSHTALSRQVTQLERHLGTQLLARTTRRLHLTE 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G L+Y+ C+ I++Q++ +S H +P+G LR+ FG LE+ Sbjct: 61 AGALFYRHCVQILEQMQAMTLELSEHQKQPSG-----------TLRLGVATAFGELELGR 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP+F++ YP+L++++ C+DRF+DL+ EE D+ LR+T LPDS+LVA+RL SE+ LVA Sbjct: 110 WLPEFVERYPQLQIELHCSDRFIDLLEEEIDICLRVTDHLPDSSLVARRLATSEVLLVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 P YLE+HGTP P DL H L YS L L+ G ++ + + V AN+ + + Sbjct: 170 PRYLERHGTPASPDDLASHPLLGYSQLLHPQRLLLANEAGEQRQILMPRRVSANSPMALR 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232 >B1K7K5.1 B1K7K5_BURCC Transcriptional regulator, LysR family Length = 302 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/243 (47%), Positives = 155/243 (63%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL AMR++R +VE+ GFSAAAD LD +H+ VSRQ++ LE LG QL+NR TR FSLT Sbjct: 1 MDQLLAMRVYRSLVEAKGFSAAADRLDTTHSTVSRQLKLLEASLGVQLVNRNTRHFSLTP 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G+ YY C++I+++V AA V+ +P+G VLR++ P+ GTLEMP Sbjct: 61 AGERYYDACVEILERVAAAAEDVTDTPGQPSG-----------VLRVSIPLSVGTLEMPA 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP F AYP++++DV C+DRFV+LI E FDV LRI+ LPDS LVAK L +S+ LVA Sbjct: 110 WLPAFRTAYPDIRLDVSCSDRFVNLIGEGFDVALRISSELPDSDLVAKTLAISDEILVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 P Y+ + G PR P +L++H+ LAYS P G V L G ++ + + Sbjct: 170 PDYVARRGLPRTPAELEKHDLLAYSGGDDRISWRVAPPSGAPVTVRLDGPLRIDAITALH 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232 >Q1I4J7.1 Q1I4J7_PSEE4 Putative transcriptional regulator, LysR family Length = 301 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 113/243 (46%), Positives = 151/243 (62%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL+AM+ FRRVV+ G FSAAA +SHTV+SRQV+ LE LG QLLNRTTRR LTE Sbjct: 1 MDQLSAMQTFRRVVDLGSFSAAATQAGLSHTVLSRQVKNLERELGTQLLNRTTRRLQLTE 60 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G L+Y+ C+ I++Q++ +S H +P G LR+ FG LE+ Sbjct: 61 AGALFYRHCVQILEQMQAMTLELSEHQQQPTG-----------TLRLGVATAFGELELGR 109 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP F++ + L++++ C+DRFVDL+ E+ DV LR+T LPDS+LVA++L SE+ LVA Sbjct: 110 WLPDFVERHERLQIELNCSDRFVDLLEEDIDVCLRVTDHLPDSSLVARKLATSEVLLVAA 169 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 PAYLE+HG P P L H L YS L L GP G V + + AN+ + + Sbjct: 170 PAYLERHGCPSTPDALAAHPLLGYSQLLHPQRLQLHGPAGETTDVVMPRRLSANSPMALR 229 Query: 241 AAA 243 AAA Sbjct: 230 AAA 232 >B1T1Z9.1 B1T1Z9_9BURK Transcriptional regulator, LysR family Length = 323 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 110/243 (45%), Positives = 153/243 (62%), Gaps = 11/243 (4%) Query: 1 MDQLAAMRIFRRVVESGGFSAAADALDISHTVVSRQVRQLEELLGAQLLNRTTRRFSLTE 60 MDQL AMRI+R +VE+ GFSAAA LD +H+ VSRQ++ LE LG QLLNR TR F+LT Sbjct: 24 MDQLFAMRIYRCLVEAKGFSAAAARLDTTHSTVSRQLKLLEASLGVQLLNRNTRNFTLTA 83 Query: 61 VGQLYYQRCIDIIDQVEDAARVVSHHHARPAGXARVVSHHHARVLRINAPMVFGTLEMPN 120 G+ YY C++I+++VE AA V+ +P+G LR++ P+ GTLEMP+ Sbjct: 84 AGERYYAACMEILERVEAAAEDVAESPRKPSG-----------TLRVSMPLSIGTLEMPD 132 Query: 121 WLPQFMQAYPELKVDVVCNDRFVDLISEEFDVGLRITRSLPDSTLVAKRLTVSEMALVAT 180 WLP F +++P++++DV C+DRF +L+ E FDV LRI+ LPDS L+A+ L VS+ LVA+ Sbjct: 133 WLPSFRRSFPDIRLDVSCSDRFSNLVGEGFDVALRISGDLPDSELMARTLAVSDEILVAS 192 Query: 181 PAYLEKHGTPREPKDLQQHNFLAYSLALQTTELVFTGPDGREQLVSLSGNVQANTGLIVC 240 P Y+ +HG PR P L H L YS T G V L G ++ +T + Sbjct: 193 PDYIARHGMPRTPAQLATHELLPYSGREDGGNWRLTPSRGTAVSVKLDGYLRIDTITAIH 252 Query: 241 AAA 243 A+A Sbjct: 253 ASA 255