BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0735.p (551 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUS2.1 D8IUS2_HERSS Inner membrane protein oxaA 802 0.0 A6T4D7.1 OXAA_JANMA Inner membrane protein oxaA 790 0.0 A4GAN3.1 OXAA_HERAR Inner membrane protein oxaA 741 0.0 B3R883.1 OXAA_CUPTR Inner membrane protein oxaA 708 0.0 D8P1C5.1 D8P1C5_RALSO Inner membrane protein oxaA 5 707 0.0 >D8IUS2.1 D8IUS2_HERSS Inner membrane protein oxaA Length = 542 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/542 (75%), Positives = 453/542 (83%), Gaps = 19/542 (3%) Query: 25 RHNGKPSMFFPTT--TQE---ATPAAAGADPSKSPVPQAAGAWTGATAGAADVAGGLPAA 79 RHNG SMFFP+ TQE A PAA A P+ SPVPQA GA GA DVA A Sbjct: 2 RHNGHQSMFFPSANPTQEQAAANPAAPTASPTGSPVPQAGTPAPGAVPGA-DVAAT--AT 58 Query: 80 KGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPTKNLVLFDSSAGHTYLAESGLIG 139 KGETI ITTD+VKA IDTVGGELKRLELLK D VDPTKN+VLFDS GH YLAESGLIG Sbjct: 59 KGETIVITTDLVKASIDTVGGELKRLELLKQPDVVDPTKNVVLFDSEPGHMYLAESGLIG 118 Query: 140 GPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKLTKTYTFKRGDYSIDLKHTVTND 199 GPFP HK+IFTA+ G R LDNGNE+QLVL A + GVKLTKTYTFKR Y ID+KHTVTN Sbjct: 119 GPFPNHKTIFTAQAGPRTLDNGNEIQLVLVADQGGVKLTKTYTFKRDSYLIDVKHTVTNT 178 Query: 200 SAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTDADKFQKLTFEKIEEGKEQHANK 259 + AAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVY++++ F+KL FEKI GK+QH NK Sbjct: 179 TGAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYSNSEHFEKLDFEKIANGKQQHVNK 238 Query: 260 ADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYAVGNILPLGTVAPGASVTMDARL 319 DNGWIA+VQHYFVSA IPP+ AQRD+F+KK+G NLYAVG+ILPLGTVAP ASVTMD++L Sbjct: 239 TDNGWIAMVQHYFVSAFIPPQNAQRDVFSKKVGDNLYAVGSILPLGTVAPNASVTMDSQL 298 Query: 320 YSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMIHIHAYVGNWGWTIILLTMLIKA 379 YSGP S L+ PGL+LV+DYG LT+IA+PIFWLM HIH VGNWGWTIILLT+LIK Sbjct: 299 YSGPTVSKTLQAIAPGLDLVRDYGHLTVIAEPIFWLMTHIHNIVGNWGWTIILLTVLIKL 358 Query: 380 VFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNREMMSLYKTEKINPLGGCLPIV 439 +FFPLSAASYRSMAKMKAV+PKM AIRERHKGDPQAMNREMM+LYKTEKINPLGGCLPI Sbjct: 359 IFFPLSAASYRSMAKMKAVSPKMQAIRERHKGDPQAMNREMMTLYKTEKINPLGGCLPIA 418 Query: 440 IQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPD-----------PFYILPVLMAVSMF 488 IQIPVFI+LY VLLASVEMRGAPWLGW+HDLTAPD P +LP++MA SMF Sbjct: 419 IQIPVFIALYSVLLASVEMRGAPWLGWVHDLTAPDRLFGTIPYFNMPIGLLPIIMAASMF 478 Query: 489 IQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNVLSITQQWVITRKLQA 548 +QTKLNPTPPDPVQAKVMMFMP+VFS MFFFFPSGLVLYWV NN+LSI QQWVITR +++ Sbjct: 479 LQTKLNPTPPDPVQAKVMMFMPLVFSFMFFFFPSGLVLYWVTNNILSIAQQWVITRNIES 538 Query: 549 GK 550 GK Sbjct: 539 GK 540 >A6T4D7.1 OXAA_JANMA Inner membrane protein oxaA Length = 564 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/561 (67%), Positives = 449/561 (80%), Gaps = 16/561 (2%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPT-TTQEATPAAAGADPSKSPVPQAA 59 MDIKRTVLWVVFSFSLL+LWD++ R+ GKPS+FF TTQ A PAAA D + P A Sbjct: 1 MDIKRTVLWVVFSFSLLMLWDNYNRYTGKPSIFFDNPTTQAAKPAAATDDGKTAAAPTAD 60 Query: 60 GAWTGA-TAGAADVAGGLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPTK 118 + A A A V + K E +TITTD++KADIDTVGGE++ LELL H ++ D TK Sbjct: 61 VPTSSAHAANATGVPDSVAPTKSEIVTITTDLIKADIDTVGGEIRHLELLTHHESSDSTK 120 Query: 119 NLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKLT 178 ++VLFDS+ TYL ++GLIGG +P HKS+FT +PG R+L+ G++VQLVLEA++NGVKL Sbjct: 121 DIVLFDSTPPRTYLGQTGLIGGAYPNHKSLFTVRPGPRSLEAGDQVQLVLEAEQNGVKLV 180 Query: 179 KTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTDA 238 KTYTFKRG+Y ID+KH V N +AAAINPSLYLQLVRDG+K ES FYSTFTGPAVY+D+ Sbjct: 181 KTYTFKRGEYKIDIKHDVINKTAAAINPSLYLQLVRDGSKLNNESMFYSTFTGPAVYSDS 240 Query: 239 DKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYAV 298 DKFQK+TFE IE+GK +H KA++GWIA+VQHYFVSA +PP R+ FTKK+ TNLYAV Sbjct: 241 DKFQKVTFESIEKGKIEHVVKAESGWIAMVQHYFVSAFVPPANVPREYFTKKLATNLYAV 300 Query: 299 GNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMIH 358 G I+P+G VAPGA+ +MDA LYSGPQES LE PG ELVKDYGWLTIIAKPIFWLMI Sbjct: 301 GAIMPMGAVAPGATQSMDATLYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIFWLMIQ 360 Query: 359 IHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMNR 418 IH +GNWGWTI++LT++IK FFPLSAASYRSMAKMK VTPKMT IR ++KG+PQ MN Sbjct: 361 IHQLLGNWGWTIVVLTIVIKLAFFPLSAASYRSMAKMKLVTPKMTEIRTKYKGEPQKMNA 420 Query: 419 EMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPFY- 477 MM LYK EKINPLGGC+PIVIQIPVFISLYWVLLASVEMR APWL WI DL +PD + Sbjct: 421 AMMELYKKEKINPLGGCMPIVIQIPVFISLYWVLLASVEMRNAPWL-WISDLASPDTLFG 479 Query: 478 ------------ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLV 525 ILP+LMA+SMFIQTKLNPTPPDP+QAKVMMFMPI FS+MFFFFP+GLV Sbjct: 480 SYMIGSFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSLMFFFFPAGLV 539 Query: 526 LYWVVNNVLSITQQWVITRKL 546 LYWVVNN+LSI QQW I++K+ Sbjct: 540 LYWVVNNILSIAQQWTISKKM 560 >A4GAN3.1 OXAA_HERAR Inner membrane protein oxaA Length = 569 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/568 (64%), Positives = 438/568 (77%), Gaps = 18/568 (3%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGADPSKSPVPQAAG 60 MDIKRTVLWV+FSFSLL+LWD++ R+ GKPS+FF +TT + A A + + A Sbjct: 1 MDIKRTVLWVIFSFSLLMLWDNYNRYTGKPSIFFDSTTTQQAAAPAATGNNAAKTADAPT 60 Query: 61 AWTGATAGAADVAG---GLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPT 117 A T A A+ G G A K E ITITTD++K IDT GGE++ LELLKH ++ D + Sbjct: 61 AATTAATSGANTPGVPDGAAAVKSEVITITTDLMKIGIDTAGGEVRHLELLKHHESGDES 120 Query: 118 KNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKL 177 KN+VLFD + HTYL ++GLIGG +P HKS+F A PG R LD+ N+VQLVL++++ GVKL Sbjct: 121 KNVVLFDENGQHTYLGQTGLIGGAYPNHKSMFAAVPGPRTLDSANQVQLVLQSEQQGVKL 180 Query: 178 TKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFY-STFTGPAVYT 236 KT+TFKRG+Y +D+KH V N+++ AI PSLYLQLV DG+ GG S F S FTGPA+YT Sbjct: 181 IKTFTFKRGEYKVDIKHDVVNNTSTAITPSLYLQLVHDGSALGGGSMFMASAFTGPAIYT 240 Query: 237 DADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLY 296 +ADKFQK+TFE IE+GK +HA K ++GWIALVQHYFVSA +PP R+ FTKK+ TNLY Sbjct: 241 EADKFQKVTFESIEKGKAEHAMKGESGWIALVQHYFVSAFVPPANTPREYFTKKLATNLY 300 Query: 297 AVGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLM 356 AVG ILP+GTVAPGA+ +MD +YSGPQES LE PG ELVKDYGWLTIIAKPIFWLM Sbjct: 301 AVGTILPMGTVAPGATASMDTTMYSGPQESKRLEAVAPGFELVKDYGWLTIIAKPIFWLM 360 Query: 357 IHIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAM 416 + IH +GNWGWTII+LT++IK FFPLSAA YRSMAKMK VTPKMT IR R+KG+PQ M Sbjct: 361 MQIHQILGNWGWTIIVLTIVIKLAFFPLSAAGYRSMAKMKLVTPKMTDIRTRYKGEPQKM 420 Query: 417 NREMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPF 476 N MM LYK EKINP+GGC P+++QIPVFISLYWVLLASVE+R A WL WIHDL APD Sbjct: 421 NAAMMELYKKEKINPIGGCFPMLVQIPVFISLYWVLLASVEIRNASWL-WIHDLAAPDIL 479 Query: 477 Y-------------ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSG 523 + ILP+LMA+SMFIQTKLNPTPPDP+QAKVMMFMPI FSVMFFFFP+G Sbjct: 480 FGSYHIGTFHLTIGILPILMAISMFIQTKLNPTPPDPIQAKVMMFMPIAFSVMFFFFPAG 539 Query: 524 LVLYWVVNNVLSITQQWVITRKLQAGKA 551 LVLYWVVNN+LSI QQW I KL GKA Sbjct: 540 LVLYWVVNNILSIAQQWFINEKLLGGKA 567 >B3R883.1 OXAA_CUPTR Inner membrane protein oxaA Length = 559 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/558 (62%), Positives = 424/558 (75%), Gaps = 12/558 (2%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGA-------DPSKS 53 MDIKRT+LWV+FS SL+LL+D+WQR NG SMFFP+TTQ+ +A A D K+ Sbjct: 1 MDIKRTILWVIFSMSLVLLYDNWQRANGHASMFFPSTTQQQAASAPAASGAAAQGDVPKA 60 Query: 54 PVPQAAGAWTGATAGAADVAGGLPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDT 113 V A G T A A GE I +TTD V+A+IDT GG + RLELLK + Sbjct: 61 NVQPATG--TSAAPAAGAAPQAAAQPTGEKIVVTTDTVRAEIDTAGGIVSRLELLKEHE- 117 Query: 114 VDPTKNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQEN 173 K +VLF+ TY+A SGLIGG P H ++FTA PG RALD +VQ+VL ++N Sbjct: 118 -KDGKPVVLFERDNVRTYMARSGLIGGDLPNHTTVFTAAPGPRALDGAEQVQVVLTGEKN 176 Query: 174 GVKLTKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPA 233 GVKL KTYTF++G Y +D K VTN A ++P+LYL+L RDG+K +S FYSTFTGPA Sbjct: 177 GVKLVKTYTFRKGSYVVDSKFDVTNAGTAPVSPTLYLELARDGSKVE-QSQFYSTFTGPA 235 Query: 234 VYTDADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGT 293 +YTDADK+ KL+FE I +GK A+NGW+A+VQHYF SA IP + + ++I Sbjct: 236 IYTDADKYHKLSFEDIAKGKATVPAAANNGWVAMVQHYFASAWIPQTGKEHSFYVQQIDP 295 Query: 294 NLYAVGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIF 353 NLY VG PLG +APGA+V+ DARL++GPQE +LEK PGLELVKDYGWLTI+AKP+F Sbjct: 296 NLYRVGIQQPLGELAPGATVSTDARLFAGPQEEHMLEKIAPGLELVKDYGWLTILAKPLF 355 Query: 354 WLMIHIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDP 413 WL+ +H ++GNWGW+II LT+LIK VFFPLSAASY+SM KMK + P+MT+IRER+K DP Sbjct: 356 WLLEKLHGFLGNWGWSIIALTVLIKLVFFPLSAASYKSMGKMKDLQPRMTSIRERYKNDP 415 Query: 414 QAMNREMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAP 473 Q MN+EMM+LY+TEK+NPLGGCLPIVIQIPVFI+LYWVLL+SVEMRGAPWLGWIHDL+ P Sbjct: 416 QKMNQEMMALYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWIHDLSVP 475 Query: 474 DPFYILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNV 533 DPFYILP++MAVSMF+QTKLNPTPPDPVQAKVMM MP+VFSVMFFFFP+GLVLYWVVNN+ Sbjct: 476 DPFYILPIVMAVSMFVQTKLNPTPPDPVQAKVMMIMPLVFSVMFFFFPAGLVLYWVVNNI 535 Query: 534 LSITQQWVITRKLQAGKA 551 LSI QQW I R L GKA Sbjct: 536 LSIAQQWQINRMLGKGKA 553 >D8P1C5.1 D8P1C5_RALSO Inner membrane protein oxaA 5 Length = 554 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/553 (63%), Positives = 412/553 (74%), Gaps = 8/553 (1%) Query: 1 MDIKRTVLWVVFSFSLLLLWDSWQRHNGKPSMFFPTTTQEATPAAAGADPSKSPVPQAAG 60 MDIKRT+LWV+FS S++LL+D+WQR NG SMFFPT T AAA VP++A Sbjct: 1 MDIKRTILWVIFSLSVVLLFDNWQRANGHQSMFFPTPQTATTSAAAPGGTPAGDVPKSAA 60 Query: 61 AWTGATAGAADVAGG---LPAAKGETITITTDVVKADIDTVGGELKRLELLKHRDTVDPT 117 A A + AA G PAA E I +TTDV++A +DT G L +LELL +D Sbjct: 61 APAAAGSQAAPATGAASQTPAA--EKIVVTTDVIRATVDTAGAILTKLELLTQKD--HDG 116 Query: 118 KNLVLFDSSAGHTYLAESGLIGGPFPTHKSIFTAKPGARALDNGNEVQLVLEAQENGVKL 177 +VLFD S TYLA SGLIGG FP H ++FTA G R L G EV L L A + G KL Sbjct: 117 NPVVLFDRSLERTYLARSGLIGGDFPNHTTVFTASAGPRDLGTGGEVSLTLTADKGGAKL 176 Query: 178 TKTYTFKRGDYSIDLKHTVTNDSAAAINPSLYLQLVRDGNKPGGESHFYSTFTGPAVYTD 237 KTY FKRG Y ID + VTND A I+P+LY++L RDG +S FYSTFTGPAVYTD Sbjct: 177 AKTYVFKRGSYVIDTRFDVTNDGTAPISPTLYMELARDGGSVE-QSRFYSTFTGPAVYTD 235 Query: 238 ADKFQKLTFEKIEEGKEQHANKADNGWIALVQHYFVSAIIPPEKAQRDIFTKKIGTNLYA 297 ADKF K+ F I++GK DNGW+ +VQHYF SA IP A+R+ + ++ TN Y Sbjct: 236 ADKFHKINFSDIDKGKAHVPAATDNGWVGMVQHYFASAWIPAASAKREFYVDRVDTNFYR 295 Query: 298 VGNILPLGTVAPGASVTMDARLYSGPQESSVLEKTTPGLELVKDYGWLTIIAKPIFWLMI 357 +G PLGTVAPGA+++ ARL++GPQE +LE TPGLELVKDYGWLTIIAKP+FWL+ Sbjct: 296 IGIQEPLGTVAPGANISATARLFAGPQEERMLEGITPGLELVKDYGWLTIIAKPLFWLLE 355 Query: 358 HIHAYVGNWGWTIILLTMLIKAVFFPLSAASYRSMAKMKAVTPKMTAIRERHKGDPQAMN 417 IH +GNWGW+I+ LT+L+K VFFPLSA SYRSMAKMK + P+MTAIRERHKGDPQ MN Sbjct: 356 KIHLLLGNWGWSIVGLTVLVKLVFFPLSATSYRSMAKMKDLQPRMTAIRERHKGDPQKMN 415 Query: 418 REMMSLYKTEKINPLGGCLPIVIQIPVFISLYWVLLASVEMRGAPWLGWIHDLTAPDPFY 477 +EMM LY+TEK+NPLGGCLPIVIQIPVFI+LYWVLL+SVEMRGAPWLGW+HDL +PDPFY Sbjct: 416 QEMMQLYRTEKVNPLGGCLPIVIQIPVFIALYWVLLSSVEMRGAPWLGWVHDLASPDPFY 475 Query: 478 ILPVLMAVSMFIQTKLNPTPPDPVQAKVMMFMPIVFSVMFFFFPSGLVLYWVVNNVLSIT 537 ILP+LMAVSMF+QT+LNPTPPDPVQAK+MMFMPI FSVMFFFFP+GLVLYWVVNN LSI Sbjct: 476 ILPILMAVSMFVQTRLNPTPPDPVQAKMMMFMPIAFSVMFFFFPAGLVLYWVVNNCLSIA 535 Query: 538 QQWVITRKLQAGK 550 QQW I R L K Sbjct: 536 QQWSINRMLGTSK 548