BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0692.p         (163 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUZ2.1 D8IUZ2_HERSS Outer membrane protein (Porin) signal pept...   204   3e-51
D8IUN2.1 D8IUN2_HERSS Outer membrane (Porin) protein                  200   7e-50
B0RKF0.1 B0RKF0_HERSE Porin                                           200   7e-50
Q6J691.1 Q6J691_9BURK Outer membrane protein                          162   2e-38
D8J0V7.1 D8J0V7_HERSS Porin signal peptide protein                    108   2e-22

>D8IUZ2.1 D8IUZ2_HERSS Outer membrane protein (Porin) signal peptide protein
          Length = 390

 Score =  204 bits (520), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 122/154 (79%), Gaps = 1/154 (0%)

Query: 10  QGSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALARK 69
            GSTA KVLN+ ASYQFGPARVYGNWSRVKQDLNT AN+      +    +  TLA + K
Sbjct: 238 NGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISNRTLAASNK 297

Query: 70  ADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLTQYNLGADYWLSKRTDLYAFVS 129
           AD++E+GTAYSL+PSLKLLAAV++T A FD ++GK KLTQ +LG DYWLSKRTDLYAF++
Sbjct: 298 ADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKRTDLYAFLA 357

Query: 130 NLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163
             +A D+ NPGV AD++GTD +Q A+ VGIRHKF
Sbjct: 358 YSKATDLNNPGV-ADSSGTDGNQGAVAVGIRHKF 390


>D8IUN2.1 D8IUN2_HERSS Outer membrane (Porin) protein
          Length = 387

 Score =  200 bits (508), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 122/155 (78%), Gaps = 11/155 (7%)

Query: 9   VQGSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALAR 68
           V G+TA K LN+VASYQFGPARVY N+SRVKQDL     +A           TATLA A+
Sbjct: 244 VAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVA-----------TATLANAQ 292

Query: 69  KADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLTQYNLGADYWLSKRTDLYAFV 128
           KAD +E+GTAYSL+PSLKLLAAV+++ A+F+ +N KGKLTQ +LGADY+LSKRTDLYAFV
Sbjct: 293 KADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLYAFV 352

Query: 129 SNLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163
           SN+RA D++NPGV    TG+D+SQTA+  GIRHKF
Sbjct: 353 SNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387


>B0RKF0.1 B0RKF0_HERSE Porin
          Length = 387

 Score =  200 bits (508), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 122/155 (78%), Gaps = 11/155 (7%)

Query: 9   VQGSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALAR 68
           V G+TA K LN+VASYQFGPARVY N+SRVKQDL     +A           TATLA A+
Sbjct: 244 VAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKGTPTVA-----------TATLANAQ 292

Query: 69  KADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLTQYNLGADYWLSKRTDLYAFV 128
           KAD +E+GTAYSL+PSLKLLAAV+++ A+F+ +N KGKLTQ +LGADY+LSKRTDLYAFV
Sbjct: 293 KADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLYAFV 352

Query: 129 SNLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163
           SN+RA D++NPGV    TG+D+SQTA+  GIRHKF
Sbjct: 353 SNMRASDIQNPGVTGGATGSDASQTAIITGIRHKF 387


>Q6J691.1 Q6J691_9BURK Outer membrane protein
          Length = 390

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 105/154 (68%), Gaps = 2/154 (1%)

Query: 11  GSTAAKVLNLVASYQFGPARVYGNWSRVKQDLNTAANIAPTLPSTATRATTATLALARKA 70
           G TA K  ++ ASYQ GPAR+YGNWSR KQ L T++N A T        T  +     KA
Sbjct: 238 GDTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFTVGSFN-NTKA 296

Query: 71  DMFELGTAYSLTPSLKLLAAVEYTTASF-DTLNGKGKLTQYNLGADYWLSKRTDLYAFVS 129
           D+FELG  Y++T  L LLA+V+Y   +F D    KGKLTQ+NLG DY+LSKRTDLYAFVS
Sbjct: 297 DIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLGTDYFLSKRTDLYAFVS 356

Query: 130 NLRAKDMKNPGVAADTTGTDSSQTALTVGIRHKF 163
           NLRAKD  NPGV  D+ G   +QTA+ VGIRHKF
Sbjct: 357 NLRAKDAVNPGVYGDSLGDTGNQTAVAVGIRHKF 390


>D8J0V7.1 D8J0V7_HERSS Porin signal peptide protein
          Length = 405

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 96/176 (54%), Gaps = 19/176 (10%)

Query: 5   GTTDVQGSTAAKVLNLVASYQFGPARVYGNWS-----------RVKQDLNTAANIAPTL- 52
           G  D  G T  K   L A+YQFGPA+VYG +S           +V++D N  A       
Sbjct: 232 GEKDHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAKTG 291

Query: 53  ----PSTATRATTATLALARKADMFELGTAYSLTPSLKLLAAVEYTTASFDTLNGKGKLT 108
               PS AT A +   A  + +  F++G +Y L PSL L++AV++T A F      G+L 
Sbjct: 292 TGYNPSDAT-AFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKF-VGAASGRLL 349

Query: 109 QYNLGADYWLSKRTDLYAFVSNLRAKDMKNPGVAADTT-GTDSSQTALTVGIRHKF 163
           Q NLGA Y LSKRT  YA V NLR+ DM N G++ D   G D SQTA++ G+ H F
Sbjct: 350 QLNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405