BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0667.p (355 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUL2.1 D8IUL2_HERSS Peptide chain release factor 1 672 0.0 A4G1N2.2 A4G1N2_HERAR Peptide chain release factor 1 658 0.0 A6SUF6.1 RF1_JANMA Peptide chain release factor 1 658 0.0 F1VX60.1 F1VX60_9BURK Peptide chain release factor 1 627 e-177 B2SZ27.1 RF1_BURPP Peptide chain release factor 1 595 e-168 >D8IUL2.1 D8IUL2_HERSS Peptide chain release factor 1 Length = 359 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/355 (90%), Positives = 341/355 (96%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQLAERLEELN+LL Q++AT+ MDN+RKMTREHAELGPLVALYH YVQAA DI T Sbjct: 5 MLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAEDIRT 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQELL+DPDMK FAQEEI+GAKARME LE DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 65 AQELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTR+AER RWQVE++SAS+SE+GGYKEVI RI G GAYSRLKFESGGHRV Sbjct: 125 ALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADEV DV+INPADIRIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKA A+KVLAARIKDVQLR+QQS+EAATRKSLIGSGDRS Sbjct: 245 RITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 355 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL+ELTNALITEHQAELLAQLGD+ Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQLGDD 359 >A4G1N2.2 A4G1N2_HERAR Peptide chain release factor 1 Length = 361 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/354 (89%), Positives = 331/354 (93%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQL ERL ELN LLMQ++ATS+MDNYRKMTREHAELGPLVALY Y QA NDI Sbjct: 6 MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 65 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQ +LSDPDMKEFAQEE+ AK RME LE DLQKMLLPKDPNDERNIFLEIRAGTGGDES Sbjct: 66 AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 125 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTRFAERNRWQ+EM+S S SEVGGYKEVIVRI G GAYS+LKFESGGHRV Sbjct: 126 ALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRV 185 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV Sbjct: 186 QRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 245 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQS+EAATRKSLIGSGDRS Sbjct: 246 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRS 305 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL EHQA+LLA LGD Sbjct: 306 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAALGD 359 >A6SUF6.1 RF1_JANMA Peptide chain release factor 1 Length = 360 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/354 (89%), Positives = 333/354 (94%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 MLAKLDQL ERL+ELN LLMQ++ATS+MDNYRKMTREHAELGPLVALY Y QA +DI Sbjct: 5 MLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADSDIQD 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQ +LSDPDMKEFAQEEI AK RME LE DLQKMLLPKDPND+RNIFLEIRAGTGGDE+ Sbjct: 65 AQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIRAGTGGDEA 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMY+RFAERNRWQ+EM+S S SEVGGYKEVIVRI GFGAYS+LKFESGGHRV Sbjct: 125 ALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVA+MPEADEVEDV+INPAD+RIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS Sbjct: 245 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL ELTNAL EHQAELLA LGD Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQAELLAALGD 358 >F1VX60.1 F1VX60_9BURK Peptide chain release factor 1 Length = 360 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 299/355 (84%), Positives = 323/355 (90%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 ML KLDQLA+RL ELN LL Q++ SDMDNYRK+TREHAELGPLV LY ++ A DI T Sbjct: 5 MLVKLDQLADRLGELNELLTQEDLASDMDNYRKLTREHAELGPLVELYDSFRVAEADIAT 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 A ++L+DPDMK+FAQEEI A+AR E +EADLQ MLLPKDPNDERN+FLEIRAGTGGDES Sbjct: 65 AHDMLADPDMKDFAQEEILAARARTEQIEADLQTMLLPKDPNDERNLFLEIRAGTGGDES 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMYTR+AERNRWQVEM+S S S+VGGYKEVIVR+ G GAYSRLKFESGGHRV Sbjct: 125 ALFAGDLLRMYTRYAERNRWQVEMVSESSSDVGGYKEVIVRVIGNGAYSRLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVP TETQGRIHTSACTVAVMPE DE+ DVDINP+D+RIDTYRASGAGGQHINKTDSAV Sbjct: 185 QRVPTTETQGRIHTSACTVAVMPEVDEISDVDINPSDLRIDTYRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 RITH+PTGIVVECQDDRSQHKNKASALKVLAARIKD Q+REQQSKEAATRKSLIGSGDRS Sbjct: 245 RITHLPTGIVVECQDDRSQHKNKASALKVLAARIKDAQVREQQSKEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGDE 355 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDL +LT AL EHQAELLA LGD+ Sbjct: 305 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLNDLTGALAAEHQAELLAALGDD 359 >B2SZ27.1 RF1_BURPP Peptide chain release factor 1 Length = 360 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 285/354 (80%), Positives = 319/354 (90%) Query: 1 MLAKLDQLAERLEELNNLLMQQEATSDMDNYRKMTREHAELGPLVALYHTYVQAANDITT 60 M KLDQL RL ELN+LL +++ TS++D YRK+TREHAELGP+V Y + QA ND TT Sbjct: 5 MQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVDHYALWRQAMNDATT 64 Query: 61 AQELLSDPDMKEFAQEEINGAKARMETLEADLQKMLLPKDPNDERNIFLEIRAGTGGDES 120 AQELL+D M++FA++EI A+ RME L A+LQKMLLPKDPND+RNIFLEIRAGTGGDES Sbjct: 65 AQELLADASMRDFAEDEIRAARERMEKLGAELQKMLLPKDPNDDRNIFLEIRAGTGGDES 124 Query: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASDSEVGGYKEVIVRIAGFGAYSRLKFESGGHRV 180 ALFAGDLLRMY RFAERNRWQVEMMSAS+S++GGYKEVIVRIAG AYS+LKFESGGHRV Sbjct: 125 ALFAGDLLRMYLRFAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESGGHRV 184 Query: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240 QRVPATETQGRIHTSACTVAVMPEADE+ +V+INPAD+RIDT+RASGAGGQHINKTDSAV Sbjct: 185 QRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKTDSAV 244 Query: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300 R+TH+PTGIVVECQDDRSQHKNK ALKVLAARIKD Q EQQ+KEAATRKSLIGSGDRS Sbjct: 245 RVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKSLIGSGDRS 304 Query: 301 ERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLEELTNALITEHQAELLAQLGD 354 ERIRTYNFPQGR+TDHRINLTLY+LD IMDGDL+EL AL++EHQAELLA LGD Sbjct: 305 ERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIAALVSEHQAELLASLGD 358