BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0653.p         (169 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IP99.1 D8IP99_HERSS Lipoprotein signal peptidase EC=3.4.23.36       277   5e-73
A6SW70.1 LSPA_JANMA Lipoprotein signal peptidase EC=3.4.23.36         269   9e-71
F1VWV5.1 F1VWV5_9BURK Lipoprotein signal peptidase                    246   1e-63
A4G3E5.1 A4G3E5_HERAR Lipoprotein signal peptidase 2 EC=3.4.23.36     244   2e-63
C6BCC8.1 C6BCC8_RALP1 Lipoprotein signal peptidase 1 EC=3.4.23.36     234   4e-60

>D8IP99.1 D8IP99_HERSS Lipoprotein signal peptidase EC=3.4.23.36
          Length = 171

 Score =  277 bits (708), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 154/170 (90%), Gaps = 1/170 (0%)

Query: 1   MASNKKRLMPSSSN-NNSLLPWLGISLIILLLDQLSKITIVKLFHYGESRPVTGFFNLVL 59
           MA+ K+    S+S+    LLPWLGI+ I+LLLDQLSKITI+KLFHYGES PVTGFFNLVL
Sbjct: 1   MATKKRSSSSSASSSTQGLLPWLGIATIVLLLDQLSKITILKLFHYGESLPVTGFFNLVL 60

Query: 60  VYNKGAAFSFLAAESGWQRHLFTAIGIAAAIYIVYLLRKHAGQRMFCWALALILGGAVGN 119
           VYNKGAAFSFLAA  GWQR+LFTAIGI AA++I++LLRKH GQRMFCWALALILGGA+GN
Sbjct: 61  VYNKGAAFSFLAASGGWQRYLFTAIGIGAAVFIIHLLRKHPGQRMFCWALALILGGAIGN 120

Query: 120 VIDRILYGHVIDFLDVFIGNWHWPAFNIADSAICVGAVLFVLDELRRVGK 169
           VIDR++YGHVIDFLDV++GNWHWPAFNIADSAICVGAVLFV+DELRRV +
Sbjct: 121 VIDRVVYGHVIDFLDVYVGNWHWPAFNIADSAICVGAVLFVVDELRRVSR 170


>A6SW70.1 LSPA_JANMA Lipoprotein signal peptidase EC=3.4.23.36
          Length = 165

 Score =  269 bits (688), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 151/169 (89%), Gaps = 4/169 (2%)

Query: 1   MASNKKRLMPSSSNNNSLLPWLGISLIILLLDQLSKITIVKLFHYGESRPVTGFFNLVLV 60
           MASNK+      S+++S+LPWLGI+ +++LLDQ++KITI +LF YGES  VT FFNLVLV
Sbjct: 1   MASNKRYF----SSSSSMLPWLGIAAVLVLLDQITKITITRLFVYGESHAVTSFFNLVLV 56

Query: 61  YNKGAAFSFLAAESGWQRHLFTAIGIAAAIYIVYLLRKHAGQRMFCWALALILGGAVGNV 120
           YNKGAAFSFLA+E+GWQR+ FT +GI AAI+I+YLL+KHAGQR+FCWALALILGGA+GNV
Sbjct: 57  YNKGAAFSFLASETGWQRYFFTIMGIGAAIFIIYLLKKHAGQRLFCWALALILGGAIGNV 116

Query: 121 IDRILYGHVIDFLDVFIGNWHWPAFNIADSAICVGAVLFVLDELRRVGK 169
           IDR+LYGHVIDFLDV IG WHWPAFNIADSAIC+GAVLF+ DELRRVGK
Sbjct: 117 IDRVLYGHVIDFLDVHIGGWHWPAFNIADSAICIGAVLFIYDELRRVGK 165


>F1VWV5.1 F1VWV5_9BURK Lipoprotein signal peptidase
          Length = 166

 Score =  246 bits (627), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 143/167 (85%), Gaps = 2/167 (1%)

Query: 3   SNKKRLMPSSSNNNSLLPWLGISLIILLLDQLSKITIVKLFHYGESRPVTGFFNLVLVYN 62
           + K R   S++  + L PWLGI+ II+L+DQL+KITI KLF YGES PVT FFNLVLV+N
Sbjct: 2   ATKNRF--STAPRSGLGPWLGIAAIIVLIDQLTKITITKLFAYGESLPVTSFFNLVLVHN 59

Query: 63  KGAAFSFLAAESGWQRHLFTAIGIAAAIYIVYLLRKHAGQRMFCWALALILGGAVGNVID 122
           +GAAFSFLA ESGWQR+ F+A+G AAA++I+YLL+++AGQR+FCWAL LILGGAVGNVID
Sbjct: 60  QGAAFSFLANESGWQRYFFSALGTAAAVFIIYLLKRNAGQRLFCWALTLILGGAVGNVID 119

Query: 123 RILYGHVIDFLDVFIGNWHWPAFNIADSAICVGAVLFVLDELRRVGK 169
           R ++G+VIDFLDV +  WHWPAFN+ADS IC+GA+LFVLDELRRV K
Sbjct: 120 RGMHGYVIDFLDVHVAGWHWPAFNVADSTICIGAILFVLDELRRVNK 166


>A4G3E5.1 A4G3E5_HERAR Lipoprotein signal peptidase 2 EC=3.4.23.36
          Length = 166

 Score =  244 bits (624), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/161 (70%), Positives = 135/161 (83%)

Query: 9   MPSSSNNNSLLPWLGISLIILLLDQLSKITIVKLFHYGESRPVTGFFNLVLVYNKGAAFS 68
           M + S N  +  WLGI+ I+++LDQ++KI I   F YGE+ PVT FFNLVLVYNKGAAFS
Sbjct: 1   MSNVSTNTGIARWLGIAAILIILDQITKIAITSTFVYGEAMPVTPFFNLVLVYNKGAAFS 60

Query: 69  FLAAESGWQRHLFTAIGIAAAIYIVYLLRKHAGQRMFCWALALILGGAVGNVIDRILYGH 128
           FLA+E+GWQRH FT IGI A+ +I+YLL+K+ GQR+  WAL LILGGA+GNVIDRILYGH
Sbjct: 61  FLASETGWQRHFFTVIGIGASAFIIYLLKKNQGQRLLSWALTLILGGAIGNVIDRILYGH 120

Query: 129 VIDFLDVFIGNWHWPAFNIADSAICVGAVLFVLDELRRVGK 169
           VIDFLDV+IGNWHWPAFNIADSAIC+GAVLFV DEL+R  K
Sbjct: 121 VIDFLDVYIGNWHWPAFNIADSAICIGAVLFVYDELKRSKK 161


>C6BCC8.1 C6BCC8_RALP1 Lipoprotein signal peptidase 1 EC=3.4.23.36
          Length = 174

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 137/159 (86%)

Query: 9   MPSSSNNNSLLPWLGISLIILLLDQLSKITIVKLFHYGESRPVTGFFNLVLVYNKGAAFS 68
           M  SS  + + PWLG+++I +LLDQL+KI ++K F YGESRP+TGFFNLVL YNKGAAFS
Sbjct: 14  MKKSSGGHGVGPWLGLAVIWILLDQLTKIAVLKTFTYGESRPITGFFNLVLAYNKGAAFS 73

Query: 69  FLAAESGWQRHLFTAIGIAAAIYIVYLLRKHAGQRMFCWALALILGGAVGNVIDRILYGH 128
           FLAA  GWQR  FT +G+AAA++IV+LL++H+GQ+MFC+ALALILGGA+GNVIDR++YGH
Sbjct: 74  FLAAAGGWQRWFFTGLGVAAALFIVWLLKRHSGQKMFCFALALILGGALGNVIDRVIYGH 133

Query: 129 VIDFLDVFIGNWHWPAFNIADSAICVGAVLFVLDELRRV 167
           V+DFLD ++ N+HWPAFN+AD  I +GAVL ++DELRRV
Sbjct: 134 VVDFLDFYLHNYHWPAFNVADCGITIGAVLLIVDELRRV 172