BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0647.p         (147 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUK4.1 D8IUK4_HERSS ABC-type transport system, periplasmic com...   277   3e-73
Q0KD40.1 Q0KD40_CUPNH ABC-type transporter, periplasmic component     244   4e-63
B3R3K8.1 B3R3K8_CUPTR Putative outer membrane LIPOPROTEIN             237   4e-61
Q8XXD8.1 Q8XXD8_RALSO Probable lipoprotein                            234   2e-60
Q46YC1.1 Q46YC1_CUPPJ Basic membrane lipoprotein                      234   3e-60

>D8IUK4.1 D8IUK4_HERSS ABC-type transport system, periplasmic
           component/surface lipoprotein
          Length = 379

 Score =  277 bits (709), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 139/147 (94%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAAS+INWGVYYTARVQAVLDGS
Sbjct: 233 VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVYYTARVQAVLDGS 292

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK+ T+W+GLKENGIDL  FNPELPADVK LVEERKKGI DGSAPIWKGPIKDN GKE +
Sbjct: 293 WKSSTSWIGLKENGIDLAAFNPELPADVKTLVEERKKGIVDGSAPIWKGPIKDNAGKEVL 352

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
            KDAVADDGFLHG+KFYVEGV+GKVPG
Sbjct: 353 GKDAVADDGFLHGIKFYVEGVDGKVPG 379


>Q0KD40.1 Q0KD40_CUPNH ABC-type transporter, periplasmic component
          Length = 381

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 130/147 (88%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           +LMQNTDSAAVVQTAQEKGV+AFGWDSDM+ FG KAHLAAS+I+WGVYY   V+ VL+  
Sbjct: 235 MLMQNTDSAAVVQTAQEKGVHAFGWDSDMSKFGDKAHLAASVISWGVYYNKVVEDVLNKQ 294

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK  TTW GLKE  IDL  FN ++PADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQ+
Sbjct: 295 WKNSTTWWGLKEGMIDLKSFNADVPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQL 354

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
           AKD VADDGFLHGVKFYVEGVEGK+PG
Sbjct: 355 AKDQVADDGFLHGVKFYVEGVEGKIPG 381


>B3R3K8.1 B3R3K8_CUPTR Putative outer membrane LIPOPROTEIN
          Length = 381

 Score =  237 bits (605), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 128/147 (87%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           +LMQNTDSAAVVQTAQEKGV+AFGWDSDMT FG KAHLAAS+I+WGVYY   V+ VL+  
Sbjct: 235 MLMQNTDSAAVVQTAQEKGVHAFGWDSDMTKFGDKAHLAASVISWGVYYNKVVEDVLNNQ 294

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK  TTW GLKE  IDL  +N ++PADVKALV+ERKKGI DG+APIWKGPIKDNTGKEQ+
Sbjct: 295 WKNSTTWWGLKEGMIDLKSYNADVPADVKALVDERKKGIIDGTAPIWKGPIKDNTGKEQL 354

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
           AKD VADD FLHGVKFYVEGVEGK+PG
Sbjct: 355 AKDQVADDKFLHGVKFYVEGVEGKIPG 381


>Q8XXD8.1 Q8XXD8_RALSO Probable lipoprotein
          Length = 380

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 123/147 (83%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           VLMQNTDSAAVVQTAQEKG YA GWDSDMT FG KAHLAASM NWGVYYT  V  VLD  
Sbjct: 234 VLMQNTDSAAVVQTAQEKGAYAIGWDSDMTKFGDKAHLAASMNNWGVYYTKVVGDVLDNQ 293

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK+ +TW GLKE  IDLG FNP +P DVKALVE RKKG+ DGSAPIWKGP+KDNTG+E +
Sbjct: 294 WKSGSTWWGLKEGAIDLGAFNPVVPQDVKALVETRKKGVIDGSAPIWKGPLKDNTGREVL 353

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
             D VADDGFLHG+KFYVEGVEGK+PG
Sbjct: 354 PADKVADDGFLHGIKFYVEGVEGKIPG 380


>Q46YC1.1 Q46YC1_CUPPJ Basic membrane lipoprotein
          Length = 381

 Score =  234 bits (598), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 123/147 (83%)

Query: 1   VLMQNTDSAAVVQTAQEKGVYAFGWDSDMTSFGPKAHLAASMINWGVYYTARVQAVLDGS 60
           +LMQNTDSAAVVQTAQEKGVYAFGWDS+M+ FG KAHLAAS I WGVYY   V  VL   
Sbjct: 235 MLMQNTDSAAVVQTAQEKGVYAFGWDSNMSKFGEKAHLAASEIQWGVYYNKVVDDVLKNQ 294

Query: 61  WKTDTTWLGLKENGIDLGGFNPELPADVKALVEERKKGIADGSAPIWKGPIKDNTGKEQV 120
           WK++TTW GLKE  IDL  FN  +P DVKALVEERKKGI DGSAPIWKGPIKDNTGKEQ+
Sbjct: 295 WKSNTTWWGLKEGMIDLKDFNTVVPDDVKALVEERKKGIVDGSAPIWKGPIKDNTGKEQI 354

Query: 121 AKDAVADDGFLHGVKFYVEGVEGKVPG 147
           AKD  ADD FLHGVKFYVEGVEGK+PG
Sbjct: 355 AKDQTADDNFLHGVKFYVEGVEGKIPG 381