BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0646.p (232 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUK4.1 D8IUK4_HERSS ABC-type transport system, periplasmic com... 369 e-100 Q0KD40.1 Q0KD40_CUPNH ABC-type transporter, periplasmic component 327 6e-88 Q46YC1.1 Q46YC1_CUPPJ Basic membrane lipoprotein 323 1e-86 D8P111.1 D8P111_RALSO Putative outer membrane lipoprotein 322 3e-86 B3R3K8.1 B3R3K8_CUPTR Putative outer membrane LIPOPROTEIN 322 3e-86 >D8IUK4.1 D8IUK4_HERSS ABC-type transport system, periplasmic component/surface lipoprotein Length = 379 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/210 (90%), Positives = 195/210 (92%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPAAAPAPAAAAPAAAEPLKVAFVYIGPVGD 60 MKISRRAS+ MLATLAAATLIGCGKKEE AA A AAA AA+PLKVAFVYIGPVGD Sbjct: 1 MKISRRASLTMLATLAAATLIGCGKKEEPAAAAPAAAPAAAAPAADPLKVAFVYIGPVGD 60 Query: 61 AGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFGYM 120 AGWTFAHD GRKAVE KFGDKVKTTFVEN+PESAADAERV RQLATDGNKLIFGTTFGYM Sbjct: 61 AGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLATDGNKLIFGTTFGYM 120 Query: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV Sbjct: 121 EAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVASV 180 Query: 181 PIPEVVRNIDAFTLGARSINPKATTRVVQV 210 PIPEV+RNID+FTLGARS+NPKATT VV V Sbjct: 181 PIPEVIRNIDSFTLGARSVNPKATTAVVWV 210 >Q0KD40.1 Q0KD40_CUPNH ABC-type transporter, periplasmic component Length = 381 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 172/212 (81%), Positives = 186/212 (87%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPA--AAPAPAAAAPAAAEPLKVAFVYIGPV 58 M ++RR ++A LA A TL GCGKKE PA A A A AA AEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATALLTLAGCGKKEADKPAETAGAASAPAAEQKAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWTFAHDNGRKAVE KFGDKVKT+FVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTFAHDNGRKAVEEKFGDKVKTSFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTA+NLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTAENLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NPKAT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPKATVKVVWV 212 >Q46YC1.1 Q46YC1_CUPPJ Basic membrane lipoprotein Length = 381 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 171/212 (80%), Positives = 185/212 (87%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKE--EATPAAAPAPAAAAPAAAEPLKVAFVYIGPV 58 M ++RR ++A LA A L GCGKKE + AAPA A AA AEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATALLALAGCGKKEAEKPAETAAPASAPAAEQKAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWT+AHD GRKAVE KFGDKVKTTFVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTYAHDAGRKAVEEKFGDKVKTTFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NPKAT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPKATVKVVWV 212 >D8P111.1 D8P111_RALSO Putative outer membrane lipoprotein Length = 384 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/215 (79%), Positives = 187/215 (86%), Gaps = 5/215 (2%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKEEATPAAAPAPAAAAPAAA-----EPLKVAFVYI 55 M ++RR ++A +A AA L GCGK EA AAPA +A A AA+ EPLKVAFVY+ Sbjct: 1 MNVTRRITLAAMAAGAAMALWGCGKSNEADKTAAPAASAPAAAASAPAAAEPLKVAFVYV 60 Query: 56 GPVGDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGT 115 GPVGDAGWTFAHD GRK VEAKFGDKVKT+FVE+VPESAADAERV R LAT GNK+IFGT Sbjct: 61 GPVGDAGWTFAHDMGRKEVEAKFGDKVKTSFVESVPESAADAERVFRDLATQGNKVIFGT 120 Query: 116 TFGYMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLG 175 +FG+ME+MLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLG Sbjct: 121 SFGFMESMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLG 180 Query: 176 VVASVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 VV SVPIPEV+RNID+FTLGARS+NPKATTRVV V Sbjct: 181 VVGSVPIPEVIRNIDSFTLGARSVNPKATTRVVWV 215 >B3R3K8.1 B3R3K8_CUPTR Putative outer membrane LIPOPROTEIN Length = 381 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/212 (80%), Positives = 183/212 (86%), Gaps = 2/212 (0%) Query: 1 MKISRRASIAMLATLAAATLIGCGKKE--EATPAAAPAPAAAAPAAAEPLKVAFVYIGPV 58 M ++RR ++A LA A L GCGKKE + A A A AA AAEPLKVAFVYIGPV Sbjct: 1 MIVTRRKTLAALAATAVLALAGCGKKEAEKPAEPAGAASAPAAGQAAEPLKVAFVYIGPV 60 Query: 59 GDAGWTFAHDNGRKAVEAKFGDKVKTTFVENVPESAADAERVMRQLATDGNKLIFGTTFG 118 GDAGWTFAHDNGRKAVE KFG KVKTTFVENVPESAADAERV R LA+ GNKLIFGTTFG Sbjct: 61 GDAGWTFAHDNGRKAVEEKFGSKVKTTFVENVPESAADAERVFRDLASQGNKLIFGTTFG 120 Query: 119 YMEAMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKSGKLGVVA 178 YME+MLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSK+GK+GVVA Sbjct: 121 YMESMLKVAKEFPDVKFEHATGFKTADNLAQYDVRTYEGAYLAGVVAGKMSKTGKMGVVA 180 Query: 179 SVPIPEVVRNIDAFTLGARSINPKATTRVVQV 210 SVPIPEV+RNID+FTLGARS+NP AT +VV V Sbjct: 181 SVPIPEVIRNIDSFTLGARSVNPNATVKVVWV 212