BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0645.p (306 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUK3.1 D8IUK3_HERSS ABC-type transport system, permease compon... 520 e-145 D8N9U0.1 D8N9U0_RALSO Putative ABC transport system (Permease pr... 490 e-136 Q0KD39.1 Q0KD39_CUPNH ABC-type transporter, permease component 489 e-136 Q8XXD9.1 Q8XXD9_RALSO Probable transmembrane abc transporter pro... 489 e-136 Q46YC2.1 Q46YC2_CUPPJ Inner-membrane translocator 488 e-136 >D8IUK3.1 D8IUK3_HERSS ABC-type transport system, permease component protein Length = 306 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 274/306 (89%), Positives = 292/306 (95%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+QLAPLIAASINAGTPLLLAAIGLLINER+GVLNLGAEGMMLVAAIAGFAVGYTT+SPL Sbjct: 1 MEQLAPLIAASINAGTPLLLAAIGLLINERSGVLNLGAEGMMLVAAIAGFAVGYTTKSPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF+AGA+CGMLMATLF+WLAL LATNQVATGLALSIFGAGLSAF+GQRFVGLALP+QST Sbjct: 61 LGFMAGAVCGMLMATLFAWLALRLATNQVATGLALSIFGAGLSAFVGQRFVGLALPAQST 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 VP L +LPF+G A F QHWM+YVA LC A WFLYRTRAGL+LRAVGESPESAHALGY Sbjct: 121 SVPLLGDLPFLGQALFHQHWMSYVAFALCLASIWFLYRTRAGLVLRAVGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 SVRGIR+LALLFGGACCGLAGAY+SLVYTPMWVEGLV+GRGWIALALTAFATWRPARVLL Sbjct: 181 SVRGIRYLALLFGGACCGLAGAYMSLVYTPMWVEGLVAGRGWIALALTAFATWRPARVLL 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 GSLLFGGVTI QFYLQG+GVT+PSQILSM PY+ATIVVLALISRNPDWIRLNMPASLGKP Sbjct: 241 GSLLFGGVTIAQFYLQGMGVTVPSQILSMAPYLATIVVLALISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPGAS Sbjct: 301 FRPGAS 306 >D8N9U0.1 D8N9U0_RALSO Putative ABC transport system (Permease protein) Length = 306 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 253/306 (82%), Positives = 280/306 (91%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+ LAPLIAASINAGTPLLLAA+GLL+NERAGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GM+MA LF+WLALVL TNQVATGLALSIFG GLSAF+GQRFVG++LP+Q+ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 G+PGL +LPFVGPA F QHWM Y ALLLC AIAWFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYFALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSL+YTPMWVE +V+GRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GV++PSQILSM P+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPGA+ Sbjct: 301 FRPGAA 306 >Q0KD39.1 Q0KD39_CUPNH ABC-type transporter, permease component Length = 306 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 255/304 (83%), Positives = 276/304 (90%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+QLAPLIA +INAGTPLLLAA+GLLINER+GVLNLGAEGMMLVAA+AGF VGY T+SPL Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERSGVLNLGAEGMMLVAAVAGFMVGYQTQSPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GMLMATLFSWLALVLATNQVATGLALSIFG GLSAF+GQRFVG A+P+Q+ Sbjct: 61 LGFAAGALAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFMGQRFVGFAMPAQAK 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 VPGL +LPF GPAFF HWM Y +LLLC AI WFL+RTRAGL LRA+GE+PESAHALGY Sbjct: 121 AVPGLADLPFFGPAFFQHHWMVYFSLLLCFAIMWFLFRTRAGLTLRAIGEAPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSLVYTPMWVE LV+GRGWIALALT FATWRP RVL+ Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLV 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTILQFYLQG+GV++PSQ LSMLPY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304 >Q8XXD9.1 Q8XXD9_RALSO Probable transmembrane abc transporter protein Length = 306 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 252/306 (82%), Positives = 279/306 (91%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+ LAPLIAASINAGTPLLLAA+GLL+NERAGVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MESLAPLIAASINAGTPLLLAALGLLMNERAGVLNLGAEGMMLVAAVAGFMVGYQTQIPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGF AGAL GM+MA LF+WLALVL TNQVATGLALSIFG GLSAF+GQRFVG++LP+Q+ Sbjct: 61 LGFAAGALAGMVMAALFAWLALVLVTNQVATGLALSIFGTGLSAFMGQRFVGMSLPAQAY 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 G+PGL +LPFVGPA F QHWM Y ALLLC AIAWFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 GIPGLKSLPFVGPALFGQHWMVYCALLLCGAIAWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSL+YTPMWVE +V+GRGWIALALT FATWRP R+L Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLIYTPMWVENMVAGRGWIALALTTFATWRPLRILF 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+LLFGGVTILQFYLQG+GV++PSQILSM P+ ATIVVLA+ISRNPDWIRLNMPASLGKP Sbjct: 241 GALLFGGVTILQFYLQGIGVSVPSQILSMAPFAATIVVLAVISRNPDWIRLNMPASLGKP 300 Query: 301 FRPGAS 306 FRPG + Sbjct: 301 FRPGTA 306 >Q46YC2.1 Q46YC2_CUPPJ Inner-membrane translocator Length = 306 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 253/304 (83%), Positives = 276/304 (90%) Query: 1 MDQLAPLIAASINAGTPLLLAAIGLLINERAGVLNLGAEGMMLVAAIAGFAVGYTTRSPL 60 M+QLAPLIA +INAGTPLLLAA+GLLINER+GVLNLGAEGMMLVAA+AGF VGY T+ PL Sbjct: 1 MEQLAPLIATAINAGTPLLLAALGLLINERSGVLNLGAEGMMLVAAVAGFMVGYQTQQPL 60 Query: 61 LGFLAGALCGMLMATLFSWLALVLATNQVATGLALSIFGAGLSAFIGQRFVGLALPSQST 120 LGFLAGA+ GMLMATLFSWLALVLATNQVATGLALSIFG GLSAF+GQRFVG A+P+Q+ Sbjct: 61 LGFLAGAVAGMLMATLFSWLALVLATNQVATGLALSIFGTGLSAFMGQRFVGFAMPAQAK 120 Query: 121 GVPGLNNLPFVGPAFFTQHWMAYVALLLCAAIAWFLYRTRAGLILRAVGESPESAHALGY 180 VP L ++PF+GPAFF HWM Y +LLLC AI WFL+RTRAGL LRA+GESPESAHALGY Sbjct: 121 SVPFLADIPFIGPAFFQHHWMVYFSLLLCFAIMWFLFRTRAGLTLRAIGESPESAHALGY 180 Query: 181 SVRGIRFLALLFGGACCGLAGAYLSLVYTPMWVEGLVSGRGWIALALTAFATWRPARVLL 240 VR IRF ALLFGGACCGLAGAYLSLVYTPMWVE LV+GRGWIALALT FATWRP RVL+ Sbjct: 181 PVRTIRFGALLFGGACCGLAGAYLSLVYTPMWVENLVAGRGWIALALTTFATWRPGRVLV 240 Query: 241 GSLLFGGVTILQFYLQGVGVTIPSQILSMLPYVATIVVLALISRNPDWIRLNMPASLGKP 300 G+ LFGGVTILQFYLQG+GV++PSQ LSMLPY ATIVVLALISRNP WIRLNMPASLGKP Sbjct: 241 GAWLFGGVTILQFYLQGIGVSVPSQFLSMLPYAATIVVLALISRNPAWIRLNMPASLGKP 300 Query: 301 FRPG 304 FRPG Sbjct: 301 FRPG 304