BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0644.p (362 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUK2.1 D8IUK2_HERSS ABC-type transport system, permease compon... 613 e-173 Q1LQ94.1 Q1LQ94_RALME ABC-type transporter, permease component; ... 515 e-144 Q0KD38.1 Q0KD38_CUPNH ABC-type transporter, permease component 510 e-142 C6BK12.1 C6BK12_RALP1 Inner-membrane translocator 508 e-142 B2U8Y1.1 B2U8Y1_RALPJ Inner-membrane translocator 507 e-141 >D8IUK2.1 D8IUK2_HERSS ABC-type transport system, permease component protein Length = 364 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 317/358 (88%), Positives = 339/358 (94%) Query: 4 SLPFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRA 63 S P RLELRG PSR MTYLSPVIAI+ TLLLGALLF+ALGKDP+AGLKVFL+DPF+ +RA Sbjct: 6 SFPLRLELRGAPSRTMTYLSPVIAIVATLLLGALLFLALGKDPLAGLKVFLIDPFNGKRA 65 Query: 64 ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGL 123 ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALC+GAMLVW+DVP H + GG+ Sbjct: 66 ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGHGVSGGM 125 Query: 124 GLILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGM 183 GL+LMIVAGVIGGA WA ITA LRD+FNANEILVSLMLTYVAQLLLM+AVNGPLKDPNGM Sbjct: 126 GLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPLKDPNGM 185 Query: 184 NFPQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAA 243 NFPQSKVFSSEFMLP L+SGTRLHIGFAV IVAA++MA+FMMRS RGFSLMVGGVAPHAA Sbjct: 186 NFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGGVAPHAA 245 Query: 244 RYAGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 303 RYAGFS+R+ALWVSLLISG FAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP Sbjct: 246 RYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 305 Query: 304 IGAVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWKQQ 361 IGA+ GGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRL W ++ Sbjct: 306 IGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLAWNKK 363 >Q1LQ94.1 Q1LQ94_RALME ABC-type transporter, permease component; inner membrane subunit Length = 364 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/357 (69%), Positives = 300/357 (84%) Query: 6 PFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRAIS 65 P L RGVPSRRM Y SP+ AI+LTLL GA+LF+ +GKDP+A LKVFLVDP +RAI Sbjct: 7 PVVLAPRGVPSRRMAYASPLFAIVLTLLFGAMLFLLIGKDPMAALKVFLVDPLKDKRAIG 66 Query: 66 ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGLGL 125 E+LLK+VPL+LCALGL+VC+RA++WNIGA+GQ +G + AGA ++W D P + G + L Sbjct: 67 EVLLKTVPLVLCALGLSVCYRANVWNIGADGQLILGGIFAGATVLWFDTPGNTTSGFVVL 126 Query: 126 ILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGMNF 185 +L +AGV+GG WA +TALL+D+FNANEILVSLMLTY+AQ LL++ VNGPLKDPNGMNF Sbjct: 127 VLASLAGVVGGMVWASVTALLKDRFNANEILVSLMLTYIAQQLLLWVVNGPLKDPNGMNF 186 Query: 186 PQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAARY 245 PQSKVFSS F+LP L+ G+RLH+GFAV +V ++M VF+ RSF G+ L VGG AP AARY Sbjct: 187 PQSKVFSSAFLLPNLLPGSRLHVGFAVMLVLVVIMTVFVFRSFAGYRLQVGGTAPLAARY 246 Query: 246 AGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPIG 305 AGFSSRNALW +L++SGG AGLAGAFE+ GPIGQLLPS+SPGYGF AIIVAF+GRLHP+G Sbjct: 247 AGFSSRNALWSALMVSGGTAGLAGAFEVTGPIGQLLPSISPGYGFTAIIVAFVGRLHPVG 306 Query: 306 AVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWKQQA 362 AVFGG++MSL Y+GGE+AQSRLGLPSAI VFQGMLLF LLACDTLID RLRW+ +A Sbjct: 307 AVFGGIVMSLFYIGGEMAQSRLGLPSAIGWVFQGMLLFFLLACDTLIDNRLRWRARA 363 >Q0KD38.1 Q0KD38_CUPNH ABC-type transporter, permease component Length = 369 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 247/354 (69%), Positives = 296/354 (83%) Query: 6 PFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRAIS 65 P L RG+PSR M Y SPV+A+ LTLL GALLF+ LGKDP+A LKVFL DP +RAI Sbjct: 12 PLSLAPRGLPSRTMAYASPVVALALTLLFGALLFLVLGKDPVAALKVFLADPLRDQRAIG 71 Query: 66 ELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGLGL 125 E+LLK+VPL+LCALGL+VC+RA++WNIGA+GQ G +CAGA +++ DVP A+ G + L Sbjct: 72 EVLLKTVPLVLCALGLSVCYRANVWNIGADGQLIAGGICAGATVLYFDVPGQAMNGTVVL 131 Query: 126 ILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGMNF 185 +L +AG++GG WA +TA+L+D+FNANEILVSLMLTY+AQ LL++ VNGPLKDPNGMNF Sbjct: 132 VLASLAGMVGGMLWASLTAVLKDRFNANEILVSLMLTYIAQQLLLWVVNGPLKDPNGMNF 191 Query: 186 PQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAARY 245 PQSKVFSSE++LP LMSG+RLH GFAV +V VM VF+ RSF G+ L VGG AP AARY Sbjct: 192 PQSKVFSSEYLLPNLMSGSRLHAGFAVMLVLVAVMTVFVFRSFAGYRLQVGGTAPAAARY 251 Query: 246 AGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHPIG 305 AGFS+R+ALW +LLISG AGLAGAFE+ GPIGQLLPS+SPGYGF AIIVAFIGRLHP+G Sbjct: 252 AGFSARSALWSALLISGATAGLAGAFEVTGPIGQLLPSISPGYGFTAIIVAFIGRLHPVG 311 Query: 306 AVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWK 359 VFGG++MSL Y+GGE+AQSRLGLPSAI VFQGMLLF LLACDTLI+ RLRW+ Sbjct: 312 TVFGGIMMSLFYIGGEMAQSRLGLPSAIGWVFQGMLLFFLLACDTLIENRLRWR 365 >C6BK12.1 C6BK12_RALP1 Inner-membrane translocator Length = 369 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 249/358 (69%), Positives = 299/358 (83%) Query: 4 SLPFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRA 63 +LP LELR +PSR M Y SP+IA+ LT++ G LLF LGKDP+AGL+VFLV+P S+RA Sbjct: 11 ALPISLELRAIPSRTMAYASPLIALALTMVFGLLLFALLGKDPVAGLRVFLVEPLVSKRA 70 Query: 64 ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGL 123 I E+LLK+VPL+LCALGL+VC+RA++WNIGAEGQ VG + A A +++ D P AIPG Sbjct: 71 IGEVLLKTVPLVLCALGLSVCYRANVWNIGAEGQLIVGGIFAAATIIYFDTPTPAIPGAF 130 Query: 124 GLILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGM 183 L+L IVAG+IGGA WA ITALLRD+F+ANEILVSLMLTY+AQLLL+Y VNGPLKDPNGM Sbjct: 131 ALVLAIVAGLIGGALWAAITALLRDRFHANEILVSLMLTYIAQLLLLYVVNGPLKDPNGM 190 Query: 184 NFPQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAA 243 NFPQS VF S F+LP L++GTRLH+GF +V M +F+ RSF G+ L VGG+AP AA Sbjct: 191 NFPQSIVFDSAFVLPTLVAGTRLHVGFLFMLVMTAAMTLFVFRSFAGYRLQVGGLAPQAA 250 Query: 244 RYAGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 303 RYAGFSSR ALW +LL+SGG AG+AGAFE+ GPIGQLLPS+SPGYGFAAI+VAF+GRL+P Sbjct: 251 RYAGFSSRAALWTALLVSGGLAGIAGAFEVTGPIGQLLPSISPGYGFAAIVVAFVGRLNP 310 Query: 304 IGAVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWKQQ 361 +G V G ++MSL Y+GGELAQSRLGLPSAITGVFQGMLLF LLACDTLI+YRLRW+ Sbjct: 311 VGTVLGAIVMSLFYIGGELAQSRLGLPSAITGVFQGMLLFFLLACDTLIEYRLRWRAH 368 >B2U8Y1.1 B2U8Y1_RALPJ Inner-membrane translocator Length = 369 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/358 (69%), Positives = 300/358 (83%) Query: 4 SLPFRLELRGVPSRRMTYLSPVIAIILTLLLGALLFMALGKDPIAGLKVFLVDPFSSRRA 63 +LP LELR +PSR M Y SP+IA++LT++ G LLF LGKDP+AGL+VFLV+P S+RA Sbjct: 11 ALPVSLELRAIPSRTMAYASPLIALVLTMVFGLLLFALLGKDPVAGLRVFLVEPLVSKRA 70 Query: 64 ISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCAGAMLVWIDVPDHAIPGGL 123 I E+LLK+VPL+LCALGL+VC+R ++WNIGAEGQ +G + A A +V+ D P AIPGG Sbjct: 71 IGEVLLKTVPLVLCALGLSVCYRTNVWNIGAEGQLILGGIFAAATIVYFDTPTPAIPGGF 130 Query: 124 GLILMIVAGVIGGAFWAGITALLRDKFNANEILVSLMLTYVAQLLLMYAVNGPLKDPNGM 183 L+L +VAG+IGGA WA ITALLRD+F+ANEILVSLMLTY+AQLLL+Y VNGPLKDPNGM Sbjct: 131 ALVLALVAGLIGGALWAAITALLRDRFHANEILVSLMLTYIAQLLLLYVVNGPLKDPNGM 190 Query: 184 NFPQSKVFSSEFMLPMLMSGTRLHIGFAVTIVAAIVMAVFMMRSFRGFSLMVGGVAPHAA 243 NFPQS VF S F+LP L++GTRLH+GF +V M +F+ RSF G+ L VGG+AP AA Sbjct: 191 NFPQSIVFDSAFVLPTLVAGTRLHVGFLFMLVMTAAMTLFVFRSFAGYRLQVGGLAPQAA 250 Query: 244 RYAGFSSRNALWVSLLISGGFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAFIGRLHP 303 RYAGFSSR ALW +LL+SGG AG+AGAFE+ GPIGQLLPS+SPGYGFAAI+VAF+GRL+P Sbjct: 251 RYAGFSSRAALWTALLVSGGLAGVAGAFEVTGPIGQLLPSISPGYGFAAIVVAFVGRLNP 310 Query: 304 IGAVFGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDYRLRWKQQ 361 +G V G ++MSL Y+GGELAQSRLGLPSAITGVFQGMLLF LLACDTLI+YRLRW+ Sbjct: 311 VGTVLGAIVMSLFYIGGELAQSRLGLPSAITGVFQGMLLFFLLACDTLIEYRLRWRAH 368