BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0642.p (263 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUK0.1 D8IUK0_HERSS ABC-type nitrate/sulfonate/bicarbonate tra... 443 e-122 F1W335.1 F1W335_9BURK Hydroxymethylpyrimidine ABC transporter, t... 409 e-112 C5T850.1 C5T850_ACIDE Binding-protein-dependent transport system... 394 e-108 A9BSH1.1 A9BSH1_DELAS Binding-protein-dependent transport system... 393 e-107 A1TL49.1 A1TL49_ACIAC Binding-protein-dependent transport system... 388 e-106 >D8IUK0.1 D8IUK0_HERSS ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein Length = 259 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/252 (87%), Positives = 238/252 (94%) Query: 6 SLNQAARTMAPWILLLAILVVWQIVCSALDVSEFIFPSPMAIIEAMIEFAGPIAHHALST 65 LN+AA T+APW LLL IL VWQ +CS VS+FIFPSP +I++AM+++AGPI HALST Sbjct: 8 KLNRAATTLAPWFLLLVILGVWQFICSVWQVSDFIFPSPGSILQAMVDYAGPITEHALST 67 Query: 66 FWVTMVGFAIAVAVGVSLGFLIGSSPLLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAG 125 FWVTMVGFAIAV VGV+LGF+IGSSP+LYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAG Sbjct: 68 FWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAG 127 Query: 126 PAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRMDILLKVGMPRSLPYFFASL 185 PAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGA+RMDILLKVG+PRS+PYFFASL Sbjct: 128 PAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASL 187 Query: 186 KVAITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAII 245 KVAITLAFVGSTVSEMNASN+GIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAII Sbjct: 188 KVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAII 247 Query: 246 EKRTTRWAHRGR 257 EKRTT WAHRG+ Sbjct: 248 EKRTTGWAHRGK 259 >F1W335.1 F1W335_9BURK Hydroxymethylpyrimidine ABC transporter, transmembrane component Length = 257 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 206/254 (81%), Positives = 230/254 (90%) Query: 5 SSLNQAARTMAPWILLLAILVVWQIVCSALDVSEFIFPSPMAIIEAMIEFAGPIAHHALS 64 + L A APW+LLL I+++WQ +CS VSEFIFPSP+AI +AM+E+AGPIA HA Sbjct: 2 TPLRHTAERFAPWLLLLLIVLLWQAICSVFSVSEFIFPSPLAIGQAMVEYAGPIAGHAWR 61 Query: 65 TFWVTMVGFAIAVAVGVSLGFLIGSSPLLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGA 124 T+WVTM GF IAVAVGV LGF IGSS LY+AAYPLMTAFNALPKAAFVP+LVVWFGIGA Sbjct: 62 TYWVTMAGFGIAVAVGVLLGFSIGSSAFLYSAAYPLMTAFNALPKAAFVPILVVWFGIGA 121 Query: 125 GPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRMDILLKVGMPRSLPYFFAS 184 GPAILTAFLI+FFPIMVNIATGLAT+EPE+EDVLRVLGA+R+D+LLKVG+PRS+PYFFAS Sbjct: 122 GPAILTAFLIAFFPIMVNIATGLATMEPEMEDVLRVLGARRIDVLLKVGLPRSMPYFFAS 181 Query: 185 LKVAITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAI 244 LKVAITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFA+ Sbjct: 182 LKVAITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAV 241 Query: 245 IEKRTTRWAHRGRD 258 IE+RTT WAHRG + Sbjct: 242 IERRTTGWAHRGSN 255 >C5T850.1 C5T850_ACIDE Binding-protein-dependent transport systems inner membrane component Length = 255 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/252 (77%), Positives = 219/252 (86%) Query: 8 NQAARTMAPWILLLAILVVWQIVCSALDVSEFIFPSPMAIIEAMIEFAGPIAHHALSTFW 67 + A +PWILL+AI+++WQIVCSA +VSEFIFPSP AI ++EF IA HA TFW Sbjct: 3 KKTAERWSPWILLVAIVLLWQIVCSAFNVSEFIFPSPWAIGVQLVEFGDVIAGHAWRTFW 62 Query: 68 VTMVGFAIAVAVGVSLGFLIGSSPLLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPA 127 VTM GF IA+ VGV LGFLIGSS L YAA YPLMTAFNALPKAAFVP+LVVWFGIG GPA Sbjct: 63 VTMAGFGIAIVVGVLLGFLIGSSRLAYAAVYPLMTAFNALPKAAFVPILVVWFGIGVGPA 122 Query: 128 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRMDILLKVGMPRSLPYFFASLKV 187 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKR D+L KVG+PRS+PYF+ SLKV Sbjct: 123 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRWDVLTKVGLPRSMPYFYGSLKV 182 Query: 188 AITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEK 247 AITLAFVG+TVSEM A+NEGIGYLL+SAGSSM+M LAFAGL+V+GAMAMAMYELF+ +EK Sbjct: 183 AITLAFVGTTVSEMTAANEGIGYLLISAGSSMQMGLAFAGLMVVGAMAMAMYELFSWVEK 242 Query: 248 RTTRWAHRGRDG 259 RTT WAHRG G Sbjct: 243 RTTGWAHRGSQG 254 >A9BSH1.1 A9BSH1_DELAS Binding-protein-dependent transport systems inner membrane component Length = 255 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/252 (76%), Positives = 220/252 (87%) Query: 8 NQAARTMAPWILLLAILVVWQIVCSALDVSEFIFPSPMAIIEAMIEFAGPIAHHALSTFW 67 + A APW+LLLA++++WQ++CSA +VSEFIFPSP AI + EF+G IA HA T+W Sbjct: 3 KKYAERWAPWVLLLAVILLWQVICSAFEVSEFIFPSPWAIGRQLAEFSGIIAAHAWRTYW 62 Query: 68 VTMVGFAIAVAVGVSLGFLIGSSPLLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPA 127 VTM GF IA+ VGV LGFLIGSS L YAA YPLMTAFNALPKAAFVP+LVVWFGIGAGPA Sbjct: 63 VTMAGFGIAIVVGVLLGFLIGSSRLAYAAFYPLMTAFNALPKAAFVPILVVWFGIGAGPA 122 Query: 128 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRMDILLKVGMPRSLPYFFASLKV 187 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGA+R D+L+KVG+PRS+PYF+ SLKV Sbjct: 123 ILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRWDVLIKVGLPRSMPYFYGSLKV 182 Query: 188 AITLAFVGSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEK 247 AITLAFVG+TVSEM A+NEGIGYLLVSAGSSM+M LAFAGL+V+GAMAM MYELF+ IEK Sbjct: 183 AITLAFVGTTVSEMTAANEGIGYLLVSAGSSMQMGLAFAGLIVVGAMAMVMYELFSAIEK 242 Query: 248 RTTRWAHRGRDG 259 RTT WA RG G Sbjct: 243 RTTGWARRGSQG 254 >A1TL49.1 A1TL49_ACIAC Binding-protein-dependent transport systems inner membrane component Length = 258 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 191/245 (77%), Positives = 216/245 (88%) Query: 15 APWILLLAILVVWQIVCSALDVSEFIFPSPMAIIEAMIEFAGPIAHHALSTFWVTMVGFA 74 +PW+LL A++V+WQ+VCS L VSEFIFPSP+AI ++EF IA HA TFWVTM GF Sbjct: 13 SPWVLLFAVIVLWQVVCSGLGVSEFIFPSPLAIWNQLVEFKWVIAGHAWRTFWVTMAGFG 72 Query: 75 IAVAVGVSLGFLIGSSPLLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAFLI 134 IA+ VGV LGF+IGSS L YAA YPLMTAFNALPKAAFVP+LVVWFGIGAGPAILTAFLI Sbjct: 73 IAIVVGVLLGFVIGSSRLAYAAIYPLMTAFNALPKAAFVPILVVWFGIGAGPAILTAFLI 132 Query: 135 SFFPIMVNIATGLATLEPELEDVLRVLGAKRMDILLKVGMPRSLPYFFASLKVAITLAFV 194 SFFPIMVNIATGLATLEPELEDVLRVLGA+R D+L KVG+PRSLPYF+ SLKVAITLAFV Sbjct: 133 SFFPIMVNIATGLATLEPELEDVLRVLGARRWDVLTKVGLPRSLPYFYGSLKVAITLAFV 192 Query: 195 GSTVSEMNASNEGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTRWAH 254 G+TVSEM A+NEGIGYLL+SAGSSM+M LAFAGL+V+GAMAMAMYELF+++EK TT WA Sbjct: 193 GTTVSEMTAANEGIGYLLISAGSSMQMGLAFAGLMVVGAMAMAMYELFSVLEKHTTGWAR 252 Query: 255 RGRDG 259 RG G Sbjct: 253 RGSQG 257