BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0619.p         (80 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IP94.1 D8IP94_HERSS ATP-dependent Clp protease adapter protein...   164   6e-39
F1VYF5.1 F1VYF5_9BURK ATP-dependent Clp protease adaptor protein...   160   6e-38
A4G7T9.1 CLPS_HERAR ATP-dependent Clp protease adapter protein ClpS   153   8e-36
A6T108.1 CLPS_JANMA ATP-dependent Clp protease adapter protein ClpS   153   8e-36
B5SHF8.1 B5SHF8_RALSO ATP-dependent Clp protease adapter protein...   146   1e-33

>D8IP94.1 D8IP94_HERSS ATP-dependent Clp protease adapter protein ClpS
          Length = 104

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/80 (96%), Positives = 78/80 (97%)

Query: 1   MYLVLLLNDDYTPMEFVVAVIQEYFNKDRETATQIMLSVHRDGKGMCGVYPKDIASTKVE 60
           MY VLLLNDDYTPMEFVVAVIQ+YFNKDRETATQIML VHRDGKGMCGVYPKDIASTKVE
Sbjct: 25  MYQVLLLNDDYTPMEFVVAVIQQYFNKDRETATQIMLKVHRDGKGMCGVYPKDIASTKVE 84

Query: 61  LVLTHARKAGHPLQCVMEEA 80
           LVLTHARKAGHPLQCVMEEA
Sbjct: 85  LVLTHARKAGHPLQCVMEEA 104


>F1VYF5.1 F1VYF5_9BURK ATP-dependent Clp protease adaptor protein ClpS
          Length = 102

 Score =  160 bits (405), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/80 (93%), Positives = 76/80 (95%)

Query: 1   MYLVLLLNDDYTPMEFVVAVIQEYFNKDRETATQIMLSVHRDGKGMCGVYPKDIASTKVE 60
           MY V LLNDDYTPMEFVVA+IQEYFNKDRE ATQIML VHRDGKGMCGVYPKDIASTKVE
Sbjct: 23  MYQVYLLNDDYTPMEFVVAIIQEYFNKDRENATQIMLMVHRDGKGMCGVYPKDIASTKVE 82

Query: 61  LVLTHARKAGHPLQCVMEEA 80
           LVLTHARKAGHPLQCVMEEA
Sbjct: 83  LVLTHARKAGHPLQCVMEEA 102


>A4G7T9.1 CLPS_HERAR ATP-dependent Clp protease adapter protein ClpS
          Length = 102

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 75/79 (94%)

Query: 1   MYLVLLLNDDYTPMEFVVAVIQEYFNKDRETATQIMLSVHRDGKGMCGVYPKDIASTKVE 60
           MY VLLLNDDYTPMEFVV ++QEYF+KDRETATQIML VHRDGKG+CGVYPKDIASTKVE
Sbjct: 23  MYQVLLLNDDYTPMEFVVMILQEYFSKDRETATQIMLMVHRDGKGICGVYPKDIASTKVE 82

Query: 61  LVLTHARKAGHPLQCVMEE 79
           LVL HARKAGHPLQCVMEE
Sbjct: 83  LVLNHARKAGHPLQCVMEE 101


>A6T108.1 CLPS_JANMA ATP-dependent Clp protease adapter protein ClpS
          Length = 102

 Score =  153 bits (386), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 75/79 (94%)

Query: 1   MYLVLLLNDDYTPMEFVVAVIQEYFNKDRETATQIMLSVHRDGKGMCGVYPKDIASTKVE 60
           MY VLLLNDDYTPMEFVV ++QEYF+KDRETATQIML VHRDGKG+CGVYPKDIASTKVE
Sbjct: 23  MYQVLLLNDDYTPMEFVVLILQEYFSKDRETATQIMLMVHRDGKGICGVYPKDIASTKVE 82

Query: 61  LVLTHARKAGHPLQCVMEE 79
           LVL HARKAGHPLQCVMEE
Sbjct: 83  LVLNHARKAGHPLQCVMEE 101


>B5SHF8.1 B5SHF8_RALSO ATP-dependent Clp protease adapter protein ClpS
          Length = 108

 Score =  146 bits (368), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 76/80 (95%)

Query: 1   MYLVLLLNDDYTPMEFVVAVIQEYFNKDRETATQIMLSVHRDGKGMCGVYPKDIASTKVE 60
           MY VLLLNDDYTPMEFVV ++Q+YF+KDRETATQIML+VHR+GKG+CG+Y +DIA+TKVE
Sbjct: 29  MYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREGKGVCGIYTRDIAATKVE 88

Query: 61  LVLTHARKAGHPLQCVMEEA 80
           LV THAR+AGHPLQCVMEEA
Sbjct: 89  LVSTHARQAGHPLQCVMEEA 108